DMR 9057 chr19:43979551-43979750 (200bp)

DMR Stats
Positionchr19:43979551-43979750 (View on UCSC)
Width200bp
Genomic Context3' end
Nearest GenesPHLDB3 (0bp away)
ANODEV p-value0.00565744636284
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 1.0 (11.11 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
9057 PHLDB3 15246 uc002own.4 chr19 43979255 44008985 - 200 100.0 0.45 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (27.5), E16 (73) 100.0
9057 PHLDB3 15246 uc010eit.3 chr19 43979255 43999846 - 200 100.0 0.45 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (27.5), E10 (73) 100.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
9057 chr19 43979685 43981684 cpgShore — values(x.gr)[overs$srow, ]:24956
9057 chr19 43979261 43979755 wgEncodeRegDnaseClusteredV2 119 score:1000, srow:582215
9057 chr19 43979460 43979715 wgEncodeRegTfbsClusteredV3 ATF1 score:406, expCount:1, expNums:468, expScores:406, srow:2032297
9057 chr19 43979175 43979750 wgEncodeRegTfbsClusteredV3 BCL3 score:531, expCount:1, expNums:46, expScores:531, srow:2032257
9057 chr19 43979332 43979641 wgEncodeRegTfbsClusteredV3 BRCA1 score:164, expCount:1, expNums:342, expScores:164, srow:2032271
9057 chr19 43979284 43979739 wgEncodeRegTfbsClusteredV3 CCNT2 score:331, expCount:1, expNums:476, expScores:331, srow:2032263
9057 chr19 43979433 43979696 wgEncodeRegTfbsClusteredV3 CEBPB score:209, expCount:1, expNums:378, expScores:209, srow:2032294
9057 chr19 43979299 43979693 wgEncodeRegTfbsClusteredV3 CHD2 score:230, expCount:2, expNums:345,380, expScores:230,150, srow:2032264
9057 chr19 43979597 43979597 cosmic COSM1242654 srow:601418
9057 chr19 43979578 43979578 cosmic COSM1525803 srow:601417
9057 chr19 43979447 43979726 wgEncodeRegTfbsClusteredV3 CREB1 score:1000, expCount:1, expNums:47, expScores:1000, srow:2032296
9057 chr19 43979360 43979684 cpgIsland CpG: 28 length:325, cpgNum:28, gcNum:193, perCpg:17.2, perGc:59.4, obsExp:0.99, srow:13857
9057 chr19 43979328 43979663 wgEncodeRegTfbsClusteredV3 E2F4 score:410, expCount:2, expNums:494,562, expScores:176,410, srow:2032270
9057 chr19 43979498 43979750 wgEncodeRegTfbsClusteredV3 E2F6 score:653, expCount:2, expNums:215,495, expScores:653,311, srow:2032300
9057 chr19 43979374 43979641 wgEncodeRegTfbsClusteredV3 EGR1 score:1000, expCount:3, expNums:87,138,216, expScores:977,1000,1000, srow:2032282
9057 chr19 43979308 43979671 wgEncodeRegTfbsClusteredV3 ELF1 score:304, expCount:2, expNums:88,217, expScores:219,304, srow:2032265
9057 chr19 43979426 43979675 wgEncodeRegTfbsClusteredV3 FOS score:173, expCount:1, expNums:557, expScores:173, srow:2032293
9057 chr19 43979358 43979661 wgEncodeRegTfbsClusteredV3 FOXP2 score:149, expCount:1, expNums:251, expScores:149, srow:2032276
9057 chr19 43979209 43979748 wgEncodeRegTfbsClusteredV3 GABPA score:214, expCount:1, expNums:54, expScores:214, srow:2032259
9057 chr19 43979262 43979757 wgEncodeRegTfbsClusteredV3 HMGN3 score:188, expCount:1, expNums:501, expScores:188, srow:2032262
9057 chr19 43979372 43979731 wgEncodeRegTfbsClusteredV3 IRF1 score:618, expCount:1, expNums:506, expScores:618, srow:2032281
9057 chr19 43979391 43979846 wgEncodeRegTfbsClusteredV3 JUND score:435, expCount:2, expNums:507,594, expScores:435,262, srow:2032285
9057 chr19 43979370 43979945 wgEncodeRegTfbsClusteredV3 KDM5B score:500, expCount:1, expNums:31, expScores:500, srow:2032280
9057 chr19 43979409 43979827 wgEncodeRegTfbsClusteredV3 MAX score:1000, expCount:6, expNums:223,278,352,395,460,511, expScores:1000,303,143,214,122,563, srow:2032290
9057 chr19 43979337 43979772 wgEncodeRegTfbsClusteredV3 MAZ score:567, expCount:2, expNums:297,512, expScores:256,567, srow:2032272
  • Page 1 of 3
  • 25 of 72 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
9057 cellmeth_recounts PrEC: 2, LNCaP: 5, DU145: 1
9057 cellexp id=ENSG00000176531, name=PHLDB3, PrEC=618, str=880, LNCaP=630, str=330, DU145=475, str=327
9057 tcgameth site:cg18851960, B=0.43, L=0.46, H=0.4
9057 tcgaexp gene=PHLDB3, entrez=653583, pos=chr19:43979255-44008985(-), B=1136, L=1856, M=1726, H=1530