DMR 9264 chr20:44803151-44803750 (600bp)
| DMR Stats | |
|---|---|
| Position | chr20:44803151-44803750 (View on UCSC) |
| Width | 600bp |
| Genomic Context | 3' end |
| Nearest Genes | CDH22 (0bp away) |
| ANODEV p-value | 2.06868578724e-05 |
| Frequencies | Benign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 3.0 (33.33 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 9264 | CDH22 | 18404 | uc010ghk.2 | chr20 | 44802372 | 44937137 | - | 600 | 100.0 | 0.19 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (5.83), E12 (94.33) | 36.83 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 9264 | chr20 | 44803663 | 44806599 | cpgShore | — | values(x.gr)[overs$srow, ]:30135 |
| 9264 | chr20 | 44803221 | 44803455 | wgEncodeRegDnaseClusteredV2 | 101 | score:1000, srow:722831 |
| 9264 | chr20 | 44803041 | 44803190 | wgEncodeRegDnaseClusteredV2 | 3 | score:195, srow:722830 |
| 9264 | chr20 | 44803506 | 44803855 | wgEncodeRegDnaseClusteredV2 | 5 | score:350, srow:722832 |
| 9264 | chr20 | 44803687 | 44803687 | cosmic | COSM1027433 | srow:756579 |
| 9264 | chr20 | 44803271 | 44803271 | cosmic | COSM1247834 | srow:756575 |
| 9264 | chr20 | 44803566 | 44803566 | cosmic | COSM289521 | srow:756577 |
| 9264 | chr20 | 44803444 | 44803444 | cosmic | COSM402210 | srow:756576 |
| 9264 | chr20 | 44803585 | 44803585 | cosmic | COSM577995 | srow:756578 |
| 9264 | chr20 | 44803219 | 44803498 | wgEncodeRegTfbsClusteredV3 | CREB1 | score:123, expCount:1, expNums:47, expScores:123, srow:2521035 |
| 9264 | chr20 | 44803165 | 44803561 | wgEncodeRegTfbsClusteredV3 | CTCF | score:1000, expCount:95, expNums:2,5,9,12,14,16,18,20,24,35,37,39,42,44,48,49,72,137,174,213,262,267,290,463,493,595,597,598,601,603,604,605,606,607,609,612,615,618,621,627,628,629,630,631,635,636,638,639,640,641,642,643,644,645,646,648,650,651,652,653,654,655,656,657,658,659,660,661,662,663,664,665,666,667,668,669,670,671,672,673,674,675,676,677,678,679,680,681,682,683,684,685,686,687,689, expScores:503,911,365,416,294,450,196,471,455,123,521,234,325,413,586,476,187,974,1000,1000,621,201,1000,588,933,1000,1000,1000,1000,1000,1000,1000,1000,1000,661,987,448,366,1000,925,1000,1000,1000,1000,1000,751,552,1000,455,499,965,697,686,1000,827,496,1000,1000,1000,1000,1000,659,786,528,650,1000,605,783,1000,354,684,851,876,1000,243,522,126,1000,658,984,639,445,952,1000,538,782,448,397,538,797,112,677,1000,1000,115, srow:2521029 |
| 9264 | chr20 | 44803563 | 44803834 | wgEncodeRegTfbsClusteredV3 | CTCF | score:159, expCount:3, expNums:603,607,667, expScores:159,138,121, srow:2521038 |
| 9264 | chr20 | 44803065 | 44803662 | cpgIsland | CpG: 68 | length:598, cpgNum:68, gcNum:380, perCpg:22.7, perGc:63.5, obsExp:1.14, srow:16720 |
| 9264 | chr20 | 44803200 | 44803523 | wgEncodeRegTfbsClusteredV3 | E2F6 | score:126, expCount:1, expNums:215, expScores:126, srow:2521033 |
| 9264 | chr20 | 44802323 | 44803498 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:287, expCount:3, expNums:19,38,43, expScores:145,198,287, srow:2521026 |
| 9264 | chr20 | 44803176 | 44803479 | wgEncodeRegTfbsClusteredV3 | FOXP2 | score:137, expCount:1, expNums:251, expScores:137, srow:2521030 |
| 9264 | chr20 | 44803223 | 44803494 | wgEncodeRegTfbsClusteredV3 | RAD21 | score:1000, expCount:11, expNums:108,149,193,231,264,280,310,355,405,448,466, expScores:431,1000,1000,569,1000,240,346,632,271,439,377, srow:2521036 |
| 9264 | chr20 | 44803141 | 44803514 | wgEncodeRegTfbsClusteredV3 | REST | score:157, expCount:2, expNums:188,257, expScores:155,157, srow:2521028 |
| 9264 | chr20 | 44803084 | 44803603 | wgEncodeRegTfbsClusteredV3 | SIN3A | score:278, expCount:1, expNums:357, expScores:278, srow:2521027 |
| 9264 | chr20 | 44803212 | 44803512 | wgEncodeRegTfbsClusteredV3 | SMC3 | score:724, expCount:4, expNums:313,408,450,535, expScores:680,724,244,259, srow:2521034 |
| 9264 | chr20 | 44803168 | 44803185 | tfbsConsSites | V$AHR_01 | score:777, zScore:1.88, srow:3127879 |
| 9264 | chr20 | 44803678 | 44803683 | tfbsConsSites | V$AML1_01 | score:1000, zScore:1.78, srow:3127908 |
| 9264 | chr20 | 44803165 | 44803182 | tfbsConsSites | V$AP4_01 | score:811, zScore:1.66, srow:3127878 |
| 9264 | chr20 | 44803458 | 44803475 | tfbsConsSites | V$AP4_01 | score:828, zScore:1.93, srow:3127894 |
| 9264 | chr20 | 44803660 | 44803677 | tfbsConsSites | V$AP4_01 | score:815, zScore:1.73, srow:3127906 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 9264 | cellmeth_recounts | PrEC: 88, LNCaP: 321, DU145: 10 |  |
| 9264 | cellmeth_diffreps_PrECvsLNCaP | A=110, B=232, Length=580, Event=Up, log2FC=1.08, padj=2.14396607284609e-09 |  |
| 9264 | cellmeth_diffreps_PrECvsDU145 | A=137, B=9, Length=820, Event=Down, log2FC=-3.93, padj=0 |  |
| 9264 | cellmeth_diffreps_LNCaPvsDU145 | A=274.74, B=9.35, Length=860, Event=Down, log2FC=-4.88, padj=0 |  |
| 9264 | cellexp | id=ENSG00000149654, name=CDH22, PrEC=0, str=0, LNCaP=1, str=1, DU145=4, str=2 |  |
| 9264 | tcgameth | site:cg12347346, B=0.33, L=0.41, H=0.35 |  |
| 9264 | tcgameth | site:cg13390630, B=0.3, L=0.41, H=0.26 |  |
| 9264 | tcgameth | site:cg17412248, B=0.23, L=0.26, H=0.21 |  |
| 9264 | tcgameth | site:cg17964981, B=0.33, L=0.39, H=0.3 |  |
| 9264 | tcgaexp | gene=CDH22, entrez=64405, pos=chr20:44802372-44937137(-), B=213, L=132, M=107, H=98 |  |