DMR Stats | |
---|---|
Position | chr4:126551-126700 (View on UCSC) |
Width | 150bp |
Genomic Context | intron |
Nearest Genes | ZNF718, ZNF595 (0bp away) |
ANODEV p-value | 0.00769950616706 |
Frequencies | Benign: 6.0 (85.71%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
2042 | ZNF718 | 21252 | uc003fzt.4 | chr4 | 53227 | 156490 | + | 150 | 100.0 | 0.29 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0) | 0.0 |
2042 | ZNF718 | 21253 | uc003fzw.4 | chr4 | 124402 | 156490 | + | 150 | 100.0 | 0.42 | 0 | 0.0 | E1 (0), I1 (100), E2 (0) | 0.0 |
2042 | ZNF595 | 21252 | uc003fzu.1 | chr4 | 53227 | 196092 | + | 150 | 100.0 | 0.29 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0) | 0.0 |
2042 | ZNF718 | 21253 | uc010iaz.3 | chr4 | 124386 | 156490 | + | 150 | 100.0 | 0.42 | 1 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
2042 | chr4 | 124842 | 126841 | cpgShore | — | values(x.gr)[overs$srow, ]:34972 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
2042 | cellmeth_recounts | PrEC: 5, LNCaP: 4, DU145: 10 | |
2042 | cellmeth_diffreps_PrECvsLNCaP | A=31, B=4, Length=380, Event=Down, log2FC=-2.95, padj=5.83103587998984e-05 | |
2042 | cellexp | id=ENSG00000250312, name=ZNF718, PrEC=319, str=382, LNCaP=355, str=423, DU145=533, str=559 | |
2042 | tcgaexp | gene=YTHDC1, entrez=91746, pos=chr4:6027-69215824(-), B=4512, L=3976, M=4109, H=4458 | |
2042 | tcgaexp | gene=ZNF595, entrez=152687, pos=chr4:53227-196092(+), B=502, L=637, M=656, H=769 | |
2042 | tcgaexp | gene=ZNF718, entrez=255403, pos=chr4:53227-156490(+), B=244, L=237, M=227, H=291 | |
2042 | tcgaexp | gene=DUX4L5, entrez=653545, pos=chr4:72836-191010142(+), B=0, L=0, M=0, H=0 |