DMR 54 chr1:4722251-4722400 (150bp)

DMR Stats
Positionchr1:4722251-4722400 (View on UCSC)
Width150bp
Genomic Contextintron
Nearest GenesAJAP1 (0bp away)
ANODEV p-value0.0140133324645
FrequenciesBenign: 0.0 (0.0%), Low: 3.0 (50.0%), High: 0.0 (0.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
54 AJAP1 135 uc001alm.1 chr1 4715105 4837854 + 150 100.0 1.65 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) 0.0
54 AJAP1 135 uc001aln.3 chr1 4715105 4843851 + 150 100.0 2.24 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
54 chr1 4722134 4722357 wgEncodeRegTfbsClusteredV3 CEBPB score:187, expCount:1, expNums:426, expScores:187, srow:11539
  • 1 features

Omics Overlaps

Dmrid Omic Set Data Plot
54 cellmeth_recounts PrEC: 2, LNCaP: 0, DU145: 3
54 cellmeth_diffreps_PrECvsLNCaP A=136, B=1, Length=620, Event=Down, log2FC=-7.09, padj=0
54 cellmeth_diffreps_PrECvsDU145 A=136, B=7, Length=540, Event=Down, log2FC=-4.28, padj=0
54 cellexp id=ENSG00000196581, name=AJAP1, PrEC=198, str=110, LNCaP=1, str=0, DU145=0, str=0
54 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
54 tcgaexp gene=AJAP1, entrez=55966, pos=chr1:4715105-4843851(+), B=163, L=62, M=59, H=49
54 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305