DMR Stats | |
---|---|
Position | chr2:171573651-171573900 (View on UCSC) |
Width | 250bp |
Genomic Context | 3' end |
Nearest Genes | SP5 (0bp away) |
ANODEV p-value | 5.89420455157e-05 |
Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1268 | SP5 | 17256 | uc002uge.3 | chr2 | 171571857 | 171574498 | + | 250 | 100.0 | 0.14 | 0 | 0.0 | E1 (0), I1 (0), E2 (100) | 100.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
1268 | chr2 | 171573664 | 171573664 | cosmic | COSM1613685 | srow:688235 |
1268 | chr2 | 171573716 | 171573716 | cosmic | COSM1009461 | srow:688236 |
1268 | chr2 | 171573732 | 171573732 | cosmic | COSM1401223 | srow:688237 |
1268 | chr2 | 171573740 | 171573740 | cosmic | COSM1266525 | srow:688238 |
1268 | chr2 | 171573752 | 171573752 | cosmic | COSM1240286 | srow:688239 |
1268 | chr2 | 171573769 | 171573769 | cosmic | COSM717766 | srow:688240 |
1268 | chr2 | 171573780 | 171573780 | cosmic | COSM1691381 | srow:688241 |
1268 | chr2 | 171573821 | 171573821 | cosmic | COSM1009462 | srow:688242 |
1268 | chr2 | 171569878 | 171573904 | cpgIsland | CpG: 331 | length:4027, cpgNum:331, gcNum:2448, perCpg:16.4, perGc:60.8, obsExp:0.89, srow:15691 |
1268 | chr2 | 171573621 | 171573718 | phastConsElements100way | lod=1050 | score:682, srow:4941924 |
1268 | chr2 | 171573720 | 171573736 | phastConsElements100way | lod=160 | score:496, srow:4941925 |
1268 | chr2 | 171573738 | 171573769 | phastConsElements100way | lod=386 | score:583, srow:4941926 |
1268 | chr2 | 171573771 | 171573786 | phastConsElements100way | lod=166 | score:500, srow:4941927 |
1268 | chr2 | 171573789 | 171573790 | phastConsElements100way | lod=39 | score:356, srow:4941928 |
1268 | chr2 | 171573792 | 171573793 | phastConsElements100way | lod=17 | score:274, srow:4941929 |
1268 | chr2 | 171573795 | 171573802 | phastConsElements100way | lod=63 | score:404, srow:4941930 |
1268 | chr2 | 171573804 | 171573829 | phastConsElements100way | lod=288 | score:554, srow:4941931 |
1268 | chr2 | 171573831 | 171573832 | phastConsElements100way | lod=18 | score:280, srow:4941932 |
1268 | chr2 | 171573834 | 171573841 | phastConsElements100way | lod=83 | score:431, srow:4941933 |
1268 | chr2 | 171573843 | 171573847 | phastConsElements100way | lod=48 | score:377, srow:4941934 |
1268 | chr2 | 171573849 | 171573871 | phastConsElements100way | lod=169 | score:501, srow:4941935 |
1268 | chr2 | 171573876 | 171573886 | phastConsElements100way | lod=53 | score:387, srow:4941936 |
1268 | chr2 | 171573888 | 171573898 | phastConsElements100way | lod=76 | score:422, srow:4941937 |
1268 | chr2 | 171573655 | 171573676 | tfbsConsSites | V$HEN1_02 | score:771, zScore:1.96, srow:2851633 |
1268 | chr2 | 171573656 | 171573675 | tfbsConsSites | V$ARNT_02 | score:787, zScore:1.9, srow:2851634 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
1268 | cellmeth_recounts | PrEC: 138, LNCaP: 1546, DU145: 18 | |
1268 | cellmeth_diffreps_PrECvsLNCaP | A=402, B=4269, Length=2660, Event=Up, log2FC=3.41, padj=0 | |
1268 | cellmeth_diffreps_PrECvsDU145 | A=395, B=41, Length=1480, Event=Down, log2FC=-3.27, padj=0 | |
1268 | cellmeth_diffreps_LNCaPvsDU145 | A=4563.75, B=46.77, Length=2640, Event=Down, log2FC=-6.61, padj=0 | |
1268 | cellexp | id=ENSG00000204335, name=SP5, PrEC=4, str=0, LNCaP=2, str=0, DU145=98, str=73 | |
1268 | tcgameth | site:cg00858840, B=0.5, L=0.64, H=0.61 | |
1268 | tcgameth | site:cg21829923, B=0.63, L=0.75, H=0.73 | |
1268 | tcgaexp | gene=SP5, entrez=389058, pos=chr2:171571857-171574498(+), B=174, L=495, M=434, H=410 |