DMR Stats | |
---|---|
Position | chr2:172944901-172945350 (View on UCSC) |
Width | 450bp |
Genomic Context | 3' end |
Nearest Genes | METAP1D (0bp away) |
ANODEV p-value | 0.00366141319931 |
Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1274 | METAP1D | 17269 | uc002uhk.3 | chr2 | 172864804 | 172945587 | + | 450 | 100.0 | 0.3 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (7.56), I9 (27.11), E10 (65.56) | 100.0 |
1274 | METAP1D | 17269 | uc010zdw.2 | chr2 | 172864804 | 172945587 | + | 450 | 100.0 | 0.16 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (7.56), I9 (27.11), E10 (65.56) | 100.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
1274 | chr2 | 172944926 | 172944926 | cosmic | COSM717730 | srow:688734 |
1274 | chr2 | 172945069 | 172945069 | cosmic | COSM1401277 | srow:688735 |
1274 | chr2 | 172945091 | 172945091 | cosmic | COSM1691393 | srow:688736 |
1274 | chr2 | 172945098 | 172945098 | cosmic | COSM1401278 | srow:688737 |
1274 | chr2 | 172945101 | 172945101 | cosmic | COSM1401279 | srow:688738 |
1274 | chr2 | 172944989 | 172945384 | cpgIsland | CpG: 36 | length:396, cpgNum:36, gcNum:235, perCpg:18.2, perGc:59.3, obsExp:1.06, srow:15708 |
1274 | chr2 | 172942989 | 172944988 | cpgShore | — | values(x.gr)[overs$srow, ]:28298 |
1274 | chr2 | 172944882 | 172944904 | phastConsElements100way | lod=157 | score:494, srow:4948976 |
1274 | chr2 | 172944906 | 172944910 | phastConsElements100way | lod=70 | score:414, srow:4948977 |
1274 | chr2 | 172944912 | 172944912 | phastConsElements100way | lod=15 | score:262, srow:4948978 |
1274 | chr2 | 172944915 | 172944919 | phastConsElements100way | lod=44 | score:368, srow:4948979 |
1274 | chr2 | 172944922 | 172944937 | phastConsElements100way | lod=146 | score:487, srow:4948980 |
1274 | chr2 | 172944959 | 172944960 | phastConsElements100way | lod=13 | score:247, srow:4948981 |
1274 | chr2 | 172945050 | 172945058 | phastConsElements100way | lod=96 | score:445, srow:4948982 |
1274 | chr2 | 172945060 | 172945061 | phastConsElements100way | lod=32 | score:337, srow:4948983 |
1274 | chr2 | 172945063 | 172945076 | phastConsElements100way | lod=152 | score:491, srow:4948984 |
1274 | chr2 | 172945078 | 172945091 | phastConsElements100way | lod=79 | score:426, srow:4948985 |
1274 | chr2 | 172945096 | 172945097 | phastConsElements100way | lod=39 | score:356, srow:4948986 |
1274 | chr2 | 172945099 | 172945099 | phastConsElements100way | lod=16 | score:268, srow:4948987 |
1274 | chr2 | 172945102 | 172945109 | phastConsElements100way | lod=73 | score:418, srow:4948988 |
1274 | chr2 | 172945111 | 172945121 | phastConsElements100way | lod=64 | score:405, srow:4948989 |
1274 | chr2 | 172945126 | 172945135 | phastConsElements100way | lod=62 | score:402, srow:4948990 |
1274 | chr2 | 172945069 | 172945084 | tfbsConsSites | V$AHRARNT_01 | score:830, zScore:1.69, srow:2854974 |
1274 | chr2 | 172944646 | 172945150 | wgEncodeRegDnaseClusteredV2 | 25 | score:905, srow:665451 |
1274 | chr2 | 172945286 | 172945575 | wgEncodeRegDnaseClusteredV2 | 5 | score:195, srow:665452 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
1274 | cellmeth_recounts | PrEC: 116, LNCaP: 21, DU145: 23 | |
1274 | cellmeth_diffreps_PrECvsLNCaP | A=174, B=17, Length=640, Event=Down, log2FC=-3.36, padj=0 | |
1274 | cellmeth_diffreps_PrECvsDU145 | A=174, B=18, Length=620, Event=Down, log2FC=-3.27, padj=0 | |
1274 | cellexp | id=ENSG00000172878, name=METAP1D, PrEC=546, str=187, LNCaP=832, str=841, DU145=610, str=732 | |
1274 | tcgameth | site:cg14996143, B=0.6, L=0.73, H=0.72 | |
1274 | tcgaexp | gene=METAP1D, entrez=254042, pos=chr2:172864804-172945587(+), B=152, L=227, M=207, H=205 |