DMR Stats | |
---|---|
Position | chr1:17019201-17019700 (View on UCSC) |
Width | 500bp |
Genomic Context | intron |
Nearest Genes | ESPNP (0bp away) |
ANODEV p-value | 0.00661142271586 |
Frequencies | Benign: 0.0 (0.0%), Low: 3.0 (50.0%), High: 1.0 (11.11 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
139 | ESPNP | 315 | uc001azn.1 | chr1 | 17017713 | 17046652 | - | 500 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (100), E11 (0) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
139 | chr1 | 17018684 | 17020959 | cpgIsland | CpG: 231 | length:2276, cpgNum:231, gcNum:1564, perCpg:20.3, perGc:68.7, obsExp:0.86, srow:517 |
139 | chr1 | 17019192 | 17019205 | phastConsElements100way | lod=80 | score:427, srow:64598 |
139 | chr1 | 17019207 | 17019211 | phastConsElements100way | lod=36 | score:348, srow:64599 |
139 | chr1 | 17019216 | 17019223 | phastConsElements100way | lod=100 | score:449, srow:64600 |
139 | chr1 | 17019226 | 17019241 | phastConsElements100way | lod=115 | score:463, srow:64601 |
139 | chr1 | 17019243 | 17019262 | phastConsElements100way | lod=184 | score:510, srow:64602 |
139 | chr1 | 17019264 | 17019280 | phastConsElements100way | lod=184 | score:510, srow:64603 |
139 | chr1 | 17019282 | 17019304 | phastConsElements100way | lod=206 | score:521, srow:64604 |
139 | chr1 | 17019306 | 17019322 | phastConsElements100way | lod=117 | score:465, srow:64605 |
139 | chr1 | 17019324 | 17019340 | phastConsElements100way | lod=204 | score:520, srow:64606 |
139 | chr1 | 17019342 | 17019355 | phastConsElements100way | lod=198 | score:517, srow:64607 |
139 | chr1 | 17019357 | 17019358 | phastConsElements100way | lod=28 | score:323, srow:64608 |
139 | chr1 | 17019360 | 17019374 | phastConsElements100way | lod=116 | score:464, srow:64609 |
139 | chr1 | 17019381 | 17019382 | phastConsElements100way | lod=25 | score:312, srow:64610 |
139 | chr1 | 17019387 | 17019388 | phastConsElements100way | lod=16 | score:268, srow:64611 |
139 | chr1 | 17019396 | 17019400 | phastConsElements100way | lod=35 | score:345, srow:64612 |
139 | chr1 | 17019402 | 17019415 | phastConsElements100way | lod=150 | score:489, srow:64613 |
139 | chr1 | 17019417 | 17019430 | phastConsElements100way | lod=134 | score:478, srow:64614 |
139 | chr1 | 17019432 | 17019433 | phastConsElements100way | lod=17 | score:274, srow:64615 |
139 | chr1 | 17019435 | 17019435 | phastConsElements100way | lod=13 | score:247, srow:64616 |
139 | chr1 | 17019438 | 17019442 | phastConsElements100way | lod=35 | score:345, srow:64617 |
139 | chr1 | 17019444 | 17019447 | phastConsElements100way | lod=13 | score:247, srow:64618 |
139 | chr1 | 17019453 | 17019457 | phastConsElements100way | lod=51 | score:383, srow:64619 |
139 | chr1 | 17019460 | 17019462 | phastConsElements100way | lod=18 | score:280, srow:64620 |
139 | chr1 | 17019468 | 17019499 | phastConsElements100way | lod=162 | score:497, srow:64621 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
139 | cellmeth_recounts | PrEC: 9, LNCaP: 576, DU145: 15 | |
139 | cellmeth_diffreps_PrECvsLNCaP | A=147, B=728, Length=1140, Event=Up, log2FC=2.31, padj=0 | |
139 | cellmeth_diffreps_LNCaPvsDU145 | A=840.27, B=33.67, Length=1320, Event=Down, log2FC=-4.64, padj=0 | |
139 | cellexp | id=ENSG00000268869, name=ESPNP, PrEC=3, str=0, LNCaP=63, str=10, DU145=8, str=7 | |
139 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 | |
139 | tcgaexp | gene=ESPNP, entrez=284729, pos=chr1:17017713-17046652(-), B=1, L=1, M=1, H=1 | |
139 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |