DMR 164 chr1:25254051-25254200 (150bp)

DMR Stats
Positionchr1:25254051-25254200 (View on UCSC)
Width150bp
Genomic Context3' end
Nearest GenesRUNX3 (0bp away)
ANODEV p-value0.00752744188319
FrequenciesBenign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
164 RUNX3 454 uc001bjq.3 chr1 25226002 25256770 - 150 100.0 0.05 0 0.0 E1 (0), I1 (0), E2 (90.67), I2 (9.33), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) 0.0
164 RUNX3 454 uc001bjr.3 chr1 25226002 25291501 - 150 100.0 0.04 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (90.67), I3 (9.33), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) 0.0
164 RUNX3 454 uc009vrj.3 chr1 25226002 25291475 - 150 100.0 0.05 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (90.67), I4 (9.33), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) 0.0
164 RUNX3 454 uc010oen.2 chr1 25226002 25256770 - 150 100.0 0.05 0 0.0 E1 (0), I1 (0), E2 (90.67), I2 (9.33), E3 (0), I3 (0), E4 (0) 0.0
  • 4 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
164 chr1 25254076 25254076 cosmic COSM1502090 srow:15597
164 chr1 25254076 25254076 cosmic COSM1502091 srow:15598
164 chr1 25254077 25254077 cosmic COSM1264686 srow:15599
164 chr1 25254077 25254077 cosmic COSM1264687 srow:15600
164 chr1 25254126 25254126 cosmic COSM183898 srow:15601
164 chr1 25254143 25254143 cosmic COSM1341238 srow:15602
164 chr1 25254143 25254143 cosmic COSM1341239 srow:15603
164 chr1 25254150 25254151 cosmic COSM143524 srow:15604
164 chr1 25254164 25254164 cosmic COSM1264684 srow:15605
164 chr1 25254164 25254164 cosmic COSM1264685 srow:15606
164 chr1 25254174 25254174 cosmic COSM1194877 srow:15607
164 chr1 25254174 25254174 cosmic COSM1194878 srow:15608
164 chr1 25253528 25255527 cpgShore — values(x.gr)[overs$srow, ]:1182
164 chr1 25254060 25254089 phastConsElements100way lod=264 score:545, srow:100280
164 chr1 25254091 25254125 phastConsElements100way lod=442 score:596, srow:100281
164 chr1 25254127 25254128 phastConsElements100way lod=35 score:345, srow:100282
164 chr1 25254130 25254134 phastConsElements100way lod=71 score:415, srow:100283
164 chr1 25254136 25254146 phastConsElements100way lod=103 score:452, srow:100284
164 chr1 25254148 25254149 phastConsElements100way lod=36 score:348, srow:100285
164 chr1 25254151 25254161 phastConsElements100way lod=141 score:483, srow:100286
164 chr1 25254163 25254170 phastConsElements100way lod=86 score:434, srow:100287
164 chr1 25254172 25254179 phastConsElements100way lod=112 score:461, srow:100288
164 chr1 25254181 25254188 phastConsElements100way lod=92 score:441, srow:100289
164 chr1 25254190 25254197 phastConsElements100way lod=88 score:437, srow:100290
164 chr1 25254199 25254200 phastConsElements100way lod=44 score:368, srow:100291
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Omics Overlaps

Dmrid Omic Set Data Plot
164 cellmeth_recounts PrEC: 162, LNCaP: 341, DU145: 9
164 cellmeth_diffreps_PrECvsLNCaP A=54, B=114, Length=240, Event=Up, log2FC=1.08, padj=0.000132644752478371
164 cellmeth_diffreps_PrECvsDU145 A=243, B=9, Length=520, Event=Down, log2FC=-4.75, padj=0
164 cellmeth_diffreps_LNCaPvsDU145 A=293.99, B=8.42, Length=560, Event=Down, log2FC=-5.13, padj=0
164 cellexp id=ENSG00000020633, name=RUNX3, PrEC=325, str=37, LNCaP=13, str=4, DU145=1814, str=1653
164 tcgameth site:cg03769939, B=0.72, L=0.83, H=0.81
164 tcgameth site:cg05656688, B=0.71, L=0.78, H=0.76
164 tcgameth site:cg11336061, B=0.81, L=0.89, H=0.86
164 tcgaexp gene=RUNX3, entrez=864, pos=chr1:25226002-25291612(-), B=382, L=368, M=346, H=404
164 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305