DMR 24873 chr1:1167951-1168200 (250bp)

DMR Stats
Positionchr1:1167951-1168200 (View on UCSC)
Width250bp
Genomic Contextpromoter
Nearest GenesB3GALT6 (0bp away)
ANODEV p-value0.0274000105313
FrequenciesBenign: 1.0 (14.29%), Low: 4.0 (66.67%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
24873 B3GALT6 52 uc001adk.3 chr1 1167629 1170420 + 250 100.0 0.17 0 71.2 E1 (100) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
24873 chr1 1168120 1168120 cosmic COSM675155 srow:428
24873 chr1 1168187 1168187 cosmic COSM324791 srow:429
24873 chr1 1167002 1168985 cpgIsland CpG: 240 length:1984, cpgNum:240, gcNum:1305, perCpg:24.2, perGc:65.8, obsExp:1.12, srow:66
24873 chr1 1167944 1167951 phastConsElements100way lod=69 score:413, srow:4348
24873 chr1 1167956 1167957 phastConsElements100way lod=34 score:343, srow:4349
24873 chr1 1167959 1167963 phastConsElements100way lod=29 score:327, srow:4350
24873 chr1 1167968 1167981 phastConsElements100way lod=66 score:408, srow:4351
24873 chr1 1167983 1168002 phastConsElements100way lod=134 score:478, srow:4352
24873 chr1 1168004 1168008 phastConsElements100way lod=44 score:368, srow:4353
24873 chr1 1168010 1168026 phastConsElements100way lod=159 score:495, srow:4354
24873 chr1 1168031 1168038 phastConsElements100way lod=59 score:397, srow:4355
24873 chr1 1168040 1168041 phastConsElements100way lod=21 score:295, srow:4356
24873 chr1 1168043 1168053 phastConsElements100way lod=107 score:456, srow:4357
24873 chr1 1168055 1168056 phastConsElements100way lod=23 score:304, srow:4358
24873 chr1 1168058 1168122 phastConsElements100way lod=569 score:621, srow:4359
24873 chr1 1168124 1168134 phastConsElements100way lod=107 score:456, srow:4360
24873 chr1 1168136 1168140 phastConsElements100way lod=45 score:370, srow:4361
24873 chr1 1168142 1168143 phastConsElements100way lod=30 score:330, srow:4362
24873 chr1 1168145 1168152 phastConsElements100way lod=81 score:429, srow:4363
24873 chr1 1168155 1168155 phastConsElements100way lod=14 score:255, srow:4364
24873 chr1 1168157 1168161 phastConsElements100way lod=48 score:377, srow:4365
24873 chr1 1168163 1168176 phastConsElements100way lod=103 score:452, srow:4366
24873 chr1 1168178 1168179 phastConsElements100way lod=30 score:330, srow:4367
24873 chr1 1168184 1168218 phastConsElements100way lod=296 score:557, srow:4368
24873 chr1 1168002 1168020 tfbsConsSites V$SEF1_C score:745, zScore:2.16, srow:746
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  • 25 of 47 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
24873 cellmeth_recounts PrEC: 76, LNCaP: 1639, DU145: 17
24873 cellmeth_diffreps_PrECvsLNCaP A=2094, B=5608, Length=1280, Event=Up, log2FC=1.42, padj=0
24873 cellmeth_diffreps_PrECvsDU145 A=2459, B=61, Length=2260, Event=Down, log2FC=-5.33, padj=0
24873 cellmeth_diffreps_LNCaPvsDU145 A=7565.63, B=74.83, Length=4420, Event=Down, log2FC=-6.66, padj=0
24873 cellexp id=ENSG00000176022, name=B3GALT6, PrEC=1331, str=1813, LNCaP=5670, str=4604, DU145=1966, str=1484
24873 tcgameth site:cg19945840, B=0.49, L=0.63, H=0.59
24873 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
24873 tcgaexp gene=B3GALT6, entrez=126792, pos=chr1:1167629-1170420(+), B=1240, L=2122, M=2201, H=1928
24873 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305