DMR 24944 chr1:6480301-6481000 (700bp)

DMR Stats
Positionchr1:6480301-6481000 (View on UCSC)
Width700bp
Genomic Contextpromoter
Nearest GenesHES2 (0bp away)
ANODEV p-value2.58454873997e-05
FrequenciesBenign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
24944 HES2 150 uc001amw.3 chr1 6472498 6484730 - 700 100.0 0.2 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
24944 chr1 6479058 6480938 cpgIsland CpG: 180 length:1881, cpgNum:180, gcNum:1251, perCpg:19.1, perGc:66.5, obsExp:0.87, srow:329
24944 chr1 6480939 6484503 cpgShore — values(x.gr)[overs$srow, ]:549
24944 chr1 6480805 6480812 phastConsElements100way lod=16 score:268, srow:22425
24944 chr1 6480821 6480836 phastConsElements100way lod=48 score:377, srow:22426
24944 chr1 6480839 6480845 phastConsElements100way lod=14 score:255, srow:22427
24944 chr1 6480850 6480869 phastConsElements100way lod=64 score:405, srow:22428
24944 chr1 6480899 6480907 phastConsElements100way lod=20 score:290, srow:22429
24944 chr1 6480981 6480985 phastConsElements100way lod=16 score:268, srow:22430
24944 chr1 6480998 6481001 phastConsElements100way lod=13 score:247, srow:22431
24944 chr1 6480359 6480386 tfbsConsSites V$PAX5_01 score:768, zScore:1.77, srow:10221
24944 chr1 6480745 6480764 tfbsConsSites V$ARNT_02 score:834, zScore:2.63, srow:10222
24944 chr1 6480745 6480764 tfbsConsSites V$MYCMAX_03 score:813, zScore:2.14, srow:10223
24944 chr1 6480748 6480761 tfbsConsSites V$USF_01 score:861, zScore:2.1, srow:10224
24944 chr1 6480749 6480759 tfbsConsSites V$SREBP1_01 score:858, zScore:1.81, srow:10225
24944 chr1 6480808 6480819 tfbsConsSites V$EGR1_01 score:851, zScore:2.05, srow:10226
24944 chr1 6480813 6480832 tfbsConsSites V$MYCMAX_03 score:796, zScore:1.91, srow:10227
24944 chr1 6480816 6480829 tfbsConsSites V$MYCMAX_01 score:800, zScore:1.77, srow:10228
24944 chr1 6480817 6480828 tfbsConsSites V$NMYC_01 score:885, zScore:1.82, srow:10229
24944 chr1 6480818 6480827 tfbsConsSites V$USF_Q6 score:896, zScore:1.71, srow:10230
24944 chr1 6480819 6480830 tfbsConsSites V$EGR2_01 score:841, zScore:1.9, srow:10231
24944 chr1 6480819 6480830 tfbsConsSites V$EGR3_01 score:869, zScore:2.4, srow:10232
24944 chr1 6480819 6480830 tfbsConsSites V$NGFIC_01 score:835, zScore:1.76, srow:10233
24944 chr1 6480819 6480836 tfbsConsSites V$CMYB_01 score:814, zScore:2.13, srow:10234
24944 chr1 6480825 6480834 tfbsConsSites V$MYB_Q6 score:921, zScore:1.85, srow:10235
24944 chr1 6480838 6480847 tfbsConsSites V$MYB_Q6 score:944, zScore:2.28, srow:10236
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  • 25 of 53 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
24944 cellmeth_recounts PrEC: 76, LNCaP: 767, DU145: 0
24944 cellmeth_diffreps_PrECvsLNCaP A=136, B=683, Length=1140, Event=Up, log2FC=2.33, padj=0
24944 cellmeth_diffreps_PrECvsDU145 A=158, B=0, Length=1000, Event=Down, log2FC=-Inf, padj=0
24944 cellmeth_diffreps_LNCaPvsDU145 A=764.37, B=0, Length=1360, Event=Down, log2FC=-Inf, padj=0
24944 cellexp id=ENSG00000069812, name=HES2, PrEC=9039, str=21515, LNCaP=78, str=123, DU145=62, str=22
24944 tcgameth site:cg00644814, B=0.46, L=0.59, H=0.56
24944 tcgameth site:cg01501312, B=0.42, L=0.6, H=0.57
24944 tcgameth site:cg24864511, B=0.32, L=0.59, H=0.49
24944 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
24944 tcgaexp gene=HES2, entrez=54626, pos=chr1:6472498-6484730(-), B=322, L=373, M=321, H=299
24944 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305