DMR 25022 chr1:14057451-14057650 (200bp)

DMR Stats
Positionchr1:14057451-14057650 (View on UCSC)
Width200bp
Genomic Contextexon
Nearest GenesPRDM2 (0bp away)
ANODEV p-value2.87697924346e-05
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25022 PRDM2 265 uc001avg.3 chr1 14026735 14151574 + 200 100.0 0.11 0 0.0 E1 (0), I1 (0), E2 (0), I2 (22), E3 (59), I3 (19.5), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) 0.0
25022 PRDM2 265 uc001avh.3 chr1 14031350 14114574 + 200 100.0 0.07 0 0.0 E1 (0), I1 (0), E2 (0), I2 (22), E3 (59), I3 (19.5), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) 0.0
25022 PRDM2 265 uc001avi.3 chr1 14031350 14151574 + 200 100.0 0.07 0 0.0 E1 (0), I1 (0), E2 (0), I2 (22), E3 (59), I3 (19.5), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25022 chr1 14057566 14057566 cosmic COSM1333443 srow:8272
25022 chr1 14057606 14057606 cosmic COSM895000 srow:8273
25022 chr1 14057612 14057612 cosmic COSM1221886 srow:8274
25022 chr1 14057482 14057497 phastConsElements100way lod=49 score:379, srow:52068
25022 chr1 14057504 14057513 phastConsElements100way lod=24 score:308, srow:52069
25022 chr1 14057522 14057532 phastConsElements100way lod=85 score:433, srow:52070
25022 chr1 14057534 14057565 phastConsElements100way lod=181 score:508, srow:52071
25022 chr1 14057567 14057618 phastConsElements100way lod=346 score:572, srow:52072
25022 chr1 14057539 14057558 tfbsConsSites V$MYCMAX_03 score:779, zScore:1.68, srow:29220
25022 chr1 14057543 14057554 tfbsConsSites V$MYCMAX_02 score:901, zScore:2.12, srow:29221
25022 chr1 14057558 14057571 tfbsConsSites V$ELK1_02 score:882, zScore:1.98, srow:29222
25022 chr1 14057605 14057618 tfbsConsSites V$NFY_C score:860, zScore:2.06, srow:29223
25022 chr1 14057226 14057775 wgEncodeRegDnaseClusteredV2 57 score:1000, srow:10805
25022 chr1 14057046 14058070 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:18, expNums:104,105,123,124,130,131,306,307,326,328,330,332,334,336,338,340,585,602, expScores:1000,1000,273,625,435,763,1000,249,1000,757,622,938,299,878,527,820,1000,399, srow:35539
25022 chr1 14057101 14057830 wgEncodeRegTfbsClusteredV3 FOXM1 score:297, expCount:1, expNums:90, expScores:243, srow:35540
25022 chr1 14057115 14057733 wgEncodeRegTfbsClusteredV3 YY1 score:249, expCount:3, expNums:119,128,133, expScores:249,189,165, srow:35541
25022 chr1 14057154 14057553 wgEncodeRegTfbsClusteredV3 WRNIP1 score:124, expCount:1, expNums:320, expScores:124, srow:35542
25022 chr1 14057165 14057661 wgEncodeRegTfbsClusteredV3 RUNX3 score:1000, expCount:1, expNums:109, expScores:310, srow:35543
25022 chr1 14057170 14057579 wgEncodeRegTfbsClusteredV3 STAT3 score:166, expCount:1, expNums:315, expScores:166, srow:35544
25022 chr1 14057181 14057538 wgEncodeRegTfbsClusteredV3 ATF2 score:847, expCount:1, expNums:79, expScores:847, srow:35545
25022 chr1 14057182 14057865 wgEncodeRegTfbsClusteredV3 PML score:425, expCount:1, expNums:103, expScores:425, srow:35546
25022 chr1 14057192 14057630 wgEncodeRegTfbsClusteredV3 PAX5 score:512, expCount:4, expNums:100,101,122,129, expScores:512,231,188,167, srow:35547
25022 chr1 14057195 14057665 wgEncodeRegTfbsClusteredV3 EP300 score:502, expCount:3, expNums:99,304,305, expScores:174,502,269, srow:35548
25022 chr1 14057195 14057905 wgEncodeRegTfbsClusteredV3 NFIC score:727, expCount:1, expNums:97, expScores:412, srow:35549
25022 chr1 14057197 14057788 wgEncodeRegTfbsClusteredV3 TBP score:313, expCount:1, expNums:317, expScores:271, srow:35550
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  • 25 of 60 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25022 cellmeth_recounts PrEC: 3, LNCaP: 1, DU145: 0
25022 cellexp id=ENSG00000116731, name=PRDM2, PrEC=3050, str=4239, LNCaP=2463, str=2583, DU145=2002, str=2354
25022 tcgameth site:cg06604289, B=0.36, L=0.66, H=0.61
25022 tcgaexp gene=PRDM2, entrez=7799, pos=chr1:14026735-14151574(+), B=3734, L=3334, M=3193, H=3190
25022 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
25022 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305