DMR 25162 chr1:26527701-26527950 (250bp)

DMR Stats
Positionchr1:26527701-26527950 (View on UCSC)
Width250bp
Genomic Context3' end
Nearest GenesCATSPER4 (0bp away)
ANODEV p-value4.06157805448e-06
FrequenciesBenign: 2.0 (28.57%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25162 CATSPER4 478 uc009vsf.3 chr1 26517119 26529033 + 250 100.0 0.18 1 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (57.6), E9 (42.4), I9 (0), E10 (0) 0.0
25162 CATSPER4 478 uc010oey.1 chr1 26517119 26528094 + 250 100.0 0.31 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (57.6), E8 (42.4) 100.0
25162 CATSPER4 478 uc010oez.2 chr1 26517119 26529033 + 250 100.0 0.22 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (57.6), E9 (42.4), I9 (0), E10 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25162 chr1 26527918 26527918 cosmic COSM1341314 srow:16273
25162 chr1 26527919 26527919 cosmic COSM1341315 srow:16274
25162 chr1 26527920 26527920 cosmic COSM79605 srow:16275
25162 chr1 26527920 26527920 cosmic COSM1341316 srow:16276
25162 chr1 26527923 26527923 cosmic COSM309872 srow:16277
25162 chr1 26527938 26527938 cosmic COSM1341317 srow:16278
25162 chr1 26527942 26527942 cosmic COSM184115 srow:16279
25162 chr1 26527776 26527779 phastConsElements100way lod=13 score:247, srow:106131
25162 chr1 26527842 26527859 phastConsElements100way lod=67 score:410, srow:106132
25162 chr1 26527861 26527896 phastConsElements100way lod=144 score:485, srow:106133
25162 chr1 26527721 26528115 wgEncodeRegDnaseClusteredV2 79 score:1000, srow:21497
25162 chr1 26527203 26527706 wgEncodeRegTfbsClusteredV3 CHD1 score:153, expCount:1, expNums:23, expScores:153, srow:72964
25162 chr1 26527304 26527827 wgEncodeRegTfbsClusteredV3 HDAC1 score:209, expCount:1, expNums:26, expScores:209, srow:72966
25162 chr1 26527317 26528096 wgEncodeRegTfbsClusteredV3 MAX score:1000, expCount:3, expNums:223,352,511, expScores:1000,131,559, srow:72967
25162 chr1 26527342 26528210 wgEncodeRegTfbsClusteredV3 RBBP5 score:429, expCount:2, expNums:8,33, expScores:196,429, srow:72968
25162 chr1 26527361 26528451 wgEncodeRegTfbsClusteredV3 POLR2A score:914, expCount:12, expNums:32,146,147,228,229,520,521,522,523,524,525,622, expScores:215,280,442,291,472,306,259,372,299,182,329,705, srow:72969
25162 chr1 26527418 26527727 wgEncodeRegTfbsClusteredV3 BHLHE40 score:428, expCount:1, expNums:472, expScores:428, srow:72970
25162 chr1 26527422 26527997 wgEncodeRegTfbsClusteredV3 KDM5B score:328, expCount:1, expNums:31, expScores:328, srow:72971
25162 chr1 26527460 26527835 wgEncodeRegTfbsClusteredV3 TBP score:330, expCount:1, expNums:545, expScores:330, srow:72973
25162 chr1 26527486 26527981 wgEncodeRegTfbsClusteredV3 HMGN3 score:137, expCount:1, expNums:501, expScores:137, srow:72974
25162 chr1 26527537 26528134 wgEncodeRegTfbsClusteredV3 MYC score:367, expCount:5, expNums:486,487,488,489,490, expScores:259,181,157,367,157, srow:72975
25162 chr1 26527539 26527934 wgEncodeRegTfbsClusteredV3 JUNB score:195, expCount:1, expNums:593, expScores:195, srow:72976
25162 chr1 26527540 26527999 wgEncodeRegTfbsClusteredV3 PHF8 score:1000, expCount:1, expNums:30, expScores:1000, srow:72977
25162 chr1 26527542 26527997 wgEncodeRegTfbsClusteredV3 CCNT2 score:148, expCount:1, expNums:476, expScores:148, srow:72978
25162 chr1 26527561 26527960 wgEncodeRegTfbsClusteredV3 TBL1XR1 score:168, expCount:1, expNums:543, expScores:168, srow:72979
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Omics Overlaps

Dmrid Omic Set Data Plot
25162 cellmeth_recounts PrEC: 18, LNCaP: 1, DU145: 10
25162 cellmeth_diffreps_PrECvsLNCaP A=26, B=1, Length=380, Event=Down, log2FC=-4.7, padj=4.5123884431573e-06
25162 cellmeth_diffreps_PrECvsDU145 A=24, B=4, Length=200, Event=Down, log2FC=-2.58, padj=0.00252994212801597
25162 cellexp id=ENSG00000188782, name=CATSPER4, PrEC=0, str=0, LNCaP=2, str=1, DU145=1, str=0
25162 tcgaexp gene=CATSPER4, entrez=378807, pos=chr1:26517119-26529033(+), B=0, L=0, M=0, H=0
25162 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305