DMR 25168 chr1:27338751-27339200 (450bp)

DMR Stats
Positionchr1:27338751-27339200 (View on UCSC)
Width450bp
Genomic Contextpromoter
Nearest GenesFAM46B, BC016143 (0bp away)
ANODEV p-value0.00223749560521
FrequenciesBenign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25168 FAM46B 504 uc010ofj.2 chr1 27331511 27339333 - 450 100.0 0.07 0 81.56 E1 (67.33), I1 (32.67), E2 (0) 0.0
25168 BC016143 494 uc021ojq.1 chr1 27145537 27392034 + 450 100.0 0.07 1 0.0 E1 (0), I1 (100), E2 (0) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25168 chr1 27338914 27338914 cosmic COSM266508 srow:17595
25168 chr1 27338937 27338937 cosmic COSM1290172 srow:17596
25168 chr1 27338944 27338944 cosmic COSM1341464 srow:17597
25168 chr1 27338948 27338948 cosmic COSM294365 srow:17598
25168 chr1 27338968 27338968 cosmic COSM1502564 srow:17599
25168 chr1 27338969 27338969 cosmic COSM1341465 srow:17600
25168 chr1 27338880 27339441 cpgIsland CpG: 52 length:562, cpgNum:52, gcNum:330, perCpg:18.5, perGc:58.7, obsExp:1.08, srow:718
25168 chr1 27336880 27338879 cpgShore — values(x.gr)[overs$srow, ]:1277
25168 chr1 27338893 27338899 phastConsElements100way lod=66 score:408, srow:111070
25168 chr1 27338902 27338909 phastConsElements100way lod=64 score:405, srow:111071
25168 chr1 27338911 27338920 phastConsElements100way lod=92 score:441, srow:111072
25168 chr1 27338926 27338942 phastConsElements100way lod=209 score:522, srow:111073
25168 chr1 27338944 27338959 phastConsElements100way lod=185 score:510, srow:111074
25168 chr1 27338964 27338966 phastConsElements100way lod=32 score:337, srow:111075
25168 chr1 27338971 27338972 phastConsElements100way lod=36 score:348, srow:111076
25168 chr1 27338974 27338975 phastConsElements100way lod=21 score:295, srow:111077
25168 chr1 27338980 27338984 phastConsElements100way lod=55 score:390, srow:111078
25168 chr1 27338986 27339002 phastConsElements100way lod=146 score:487, srow:111079
25168 chr1 27339007 27339034 phastConsElements100way lod=71 score:415, srow:111080
25168 chr1 27339049 27339057 phastConsElements100way lod=55 score:390, srow:111081
25168 chr1 27339070 27339073 phastConsElements100way lod=15 score:262, srow:111082
25168 chr1 27339082 27339091 phastConsElements100way lod=19 score:285, srow:111083
25168 chr1 27339107 27339121 phastConsElements100way lod=23 score:304, srow:111084
25168 chr1 27339144 27339158 phastConsElements100way lod=40 score:359, srow:111085
25168 chr1 27339182 27339194 phastConsElements100way lod=30 score:330, srow:111086
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  • 25 of 52 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25168 cellmeth_recounts PrEC: 87, LNCaP: 457, DU145: 0
25168 cellmeth_diffreps_PrECvsLNCaP A=132, B=634, Length=1020, Event=Up, log2FC=2.26, padj=0
25168 cellmeth_diffreps_PrECvsDU145 A=130, B=0, Length=600, Event=Down, log2FC=-Inf, padj=0
25168 cellmeth_diffreps_LNCaPvsDU145 A=678.84, B=0.94, Length=1120, Event=Down, log2FC=-9.5, padj=0
25168 cellexp id=ENSG00000158246, name=FAM46B, PrEC=595, str=94, LNCaP=5, str=3, DU145=845, str=648
25168 tcgameth site:cg16352283, B=0.5, L=0.6, H=0.61
25168 tcgameth site:cg20486246, B=0.45, L=0.4, H=0.46
25168 tcgaexp gene=FAM46B, entrez=115572, pos=chr1:27331511-27339333(-), B=1385, L=762, M=507, H=358
25168 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305