DMR 25199 chr1:32409801-32410800 (1000bp)
| DMR Stats | |
|---|---|
| Position | chr1:32409801-32410800 (View on UCSC) |
| Width | 1000bp |
| Genomic Context | intergenic |
| Nearest Genes | PTP4A2 (5812bp away) |
| ANODEV p-value | 4.11807130212e-07 |
| Frequencies | Benign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 25199 | chr1 | 32410189 | 32410630 | cpgIsland | CpG: 39 | length:442, cpgNum:39, gcNum:294, perCpg:17.6, perGc:66.5, obsExp:0.82, srow:801 |
| 25199 | chr1 | 32408189 | 32410188 | cpgShore | — | values(x.gr)[overs$srow, ]:1433 |
| 25199 | chr1 | 32410631 | 32412630 | cpgShore | — | values(x.gr)[overs$srow, ]:1434 |
| 25199 | chr1 | 32409845 | 32409858 | phastConsElements100way | lod=20 | score:290, srow:131712 |
| 25199 | chr1 | 32409861 | 32409870 | phastConsElements100way | lod=16 | score:268, srow:131713 |
| 25199 | chr1 | 32409959 | 32409963 | phastConsElements100way | lod=16 | score:268, srow:131714 |
| 25199 | chr1 | 32409978 | 32409980 | phastConsElements100way | lod=16 | score:268, srow:131715 |
| 25199 | chr1 | 32409986 | 32409995 | phastConsElements100way | lod=38 | score:354, srow:131716 |
| 25199 | chr1 | 32410002 | 32410009 | phastConsElements100way | lod=29 | score:327, srow:131717 |
| 25199 | chr1 | 32410013 | 32410089 | phastConsElements100way | lod=306 | score:560, srow:131718 |
| 25199 | chr1 | 32410097 | 32410100 | phastConsElements100way | lod=17 | score:274, srow:131719 |
| 25199 | chr1 | 32410117 | 32410119 | phastConsElements100way | lod=13 | score:247, srow:131720 |
| 25199 | chr1 | 32410173 | 32410181 | phastConsElements100way | lod=16 | score:268, srow:131721 |
| 25199 | chr1 | 32410468 | 32410473 | phastConsElements100way | lod=15 | score:262, srow:131722 |
| 25199 | chr1 | 32410479 | 32410481 | phastConsElements100way | lod=13 | score:247, srow:131723 |
| 25199 | chr1 | 32409901 | 32410315 | wgEncodeRegDnaseClusteredV2 | 104 | score:1000, srow:26291 |
| 25199 | chr1 | 32410386 | 32410695 | wgEncodeRegDnaseClusteredV2 | 105 | score:1000, srow:26292 |
| 25199 | chr1 | 32409262 | 32409851 | wgEncodeRegTfbsClusteredV3 | IKZF1 | score:510, expCount:1, expNums:294, expScores:510, srow:93652 |
| 25199 | chr1 | 32409401 | 32409916 | wgEncodeRegTfbsClusteredV3 | CEBPB | score:236, expCount:1, expNums:85, expScores:236, srow:93656 |
| 25199 | chr1 | 32409642 | 32410795 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:1000, expCount:53, expNums:22,32,61,62,104,105,123,124,130,131,146,147,163,168,206,207,228,229,249,256,283,306,307,308,326,328,330,332,334,336,338,340,362,366,402,403,465,520,521,522,523,524,525,526,577,583,585,596,602,610,613,622,637, expScores:128,410,796,509,892,1000,909,1000,592,1000,931,1000,548,944,237,542,715,1000,191,263,440,1000,857,579,1000,1000,1000,1000,1000,1000,1000,1000,227,202,551,678,235,641,587,702,785,238,949,434,229,734,788,257,639,489,519,1000,134, srow:93657 |
| 25199 | chr1 | 32409666 | 32410763 | wgEncodeRegTfbsClusteredV3 | KAP1 | score:671, expCount:2, expNums:365,588, expScores:334,353, srow:93658 |
| 25199 | chr1 | 32409685 | 32410053 | wgEncodeRegTfbsClusteredV3 | PHF8 | score:753, expCount:1, expNums:30, expScores:753, srow:93659 |
| 25199 | chr1 | 32409760 | 32410359 | wgEncodeRegTfbsClusteredV3 | CTBP2 | score:133, expCount:1, expNums:348, expScores:133, srow:93660 |
| 25199 | chr1 | 32409761 | 32410196 | wgEncodeRegTfbsClusteredV3 | CHD1 | score:156, expCount:1, expNums:287, expScores:156, srow:93661 |
| 25199 | chr1 | 32409773 | 32410057 | wgEncodeRegTfbsClusteredV3 | KDM5B | score:614, expCount:1, expNums:31, expScores:614, srow:93662 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 25199 | cellmeth_recounts | PrEC: 33, LNCaP: 271, DU145: 4 |  |
| 25199 | cellmeth_diffreps_PrECvsLNCaP | A=29, B=205, Length=1000, Event=Up, log2FC=2.82, padj=0 |  |
| 25199 | cellmeth_diffreps_PrECvsDU145 | A=30, B=0, Length=400, Event=Down, log2FC=-Inf, padj=1.21014621758047e-08 |  |
| 25199 | cellmeth_diffreps_PrECvsDU145 | A=14, B=0, Length=240, Event=Down, log2FC=-Inf, padj=0.000506195974236337 |  |
| 25199 | cellmeth_diffreps_PrECvsDU145 | A=28, B=5, Length=200, Event=Down, log2FC=-2.49, padj=0.00112599535425937 |  |
| 25199 | cellmeth_diffreps_LNCaPvsDU145 | A=244.81, B=7.48, Length=1280, Event=Down, log2FC=-5.03, padj=0 |  |
| 25199 | cellexp | id=ENSG00000184007, name=PTP4A2, PrEC=10620, str=6229, LNCaP=6667, str=7060, DU145=21329, str=22046 |  |
| 25199 | tcgameth | site:cg00925616, B=0.32, L=0.65, H=0.64 |  |
| 25199 | tcgameth | site:cg04881103, B=0.23, L=0.53, H=0.48 |  |
| 25199 | tcgameth | site:cg11756095, B=0.25, L=0.63, H=0.6 |  |
| 25199 | tcgameth | site:cg17942618, B=0.7, L=0.74, H=0.73 |  |
| 25199 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |