DMR 25204 chr1:32829351-32829500 (150bp)

DMR Stats
Positionchr1:32829351-32829500 (View on UCSC)
Width150bp
Genomic Context3' end
Nearest GenesTSSK3 (0bp away)
ANODEV p-value0.0199178821258
FrequenciesBenign: 1.0 (14.29%), Low: 4.0 (66.67%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25204 TSSK3 593 uc001bvf.3 chr1 32827862 32829924 + 150 100.0 0.18 0 0.0 E1 (0), I1 (0), E2 (100) 100.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25204 chr1 32829360 32829360 cosmic COSM138183 srow:20560
25204 chr1 32829406 32829406 cosmic COSM426105 srow:20561
25204 chr1 32829418 32829418 cosmic COSM294920 srow:20562
25204 chr1 32828018 32830017 cpgShore — values(x.gr)[overs$srow, ]:1462
25204 chr1 32829360 32829361 phastConsElements100way lod=19 score:285, srow:134191
25204 chr1 32829372 32829374 phastConsElements100way lod=19 score:285, srow:134192
25204 chr1 32829381 32829382 phastConsElements100way lod=27 score:320, srow:134193
25204 chr1 32829393 32829394 phastConsElements100way lod=29 score:327, srow:134194
25204 chr1 32829399 32829406 phastConsElements100way lod=67 score:410, srow:134195
25204 chr1 32829411 32829415 phastConsElements100way lod=43 score:366, srow:134196
25204 chr1 32829420 32829427 phastConsElements100way lod=63 score:404, srow:134197
25204 chr1 32829438 32829441 phastConsElements100way lod=39 score:356, srow:134198
25204 chr1 32829444 32829454 phastConsElements100way lod=125 score:471, srow:134199
25204 chr1 32829456 32829457 phastConsElements100way lod=35 score:345, srow:134200
25204 chr1 32829459 32829460 phastConsElements100way lod=21 score:295, srow:134201
25204 chr1 32829462 32829466 phastConsElements100way lod=84 score:432, srow:134202
25204 chr1 32829472 32829475 phastConsElements100way lod=27 score:320, srow:134203
25204 chr1 32829480 32829481 phastConsElements100way lod=21 score:295, srow:134204
25204 chr1 32829492 32829499 phastConsElements100way lod=49 score:379, srow:134205
25204 chr1 32829361 32829381 tfbsConsSites V$STAT1_01 score:769, zScore:1.89, srow:69936
25204 chr1 32829370 32829387 tfbsConsSites V$NF1_Q6 score:867, zScore:1.65, srow:69937
25204 chr1 32829372 32829391 tfbsConsSites V$PPARA_01 score:752, zScore:2, srow:69938
25204 chr1 32829390 32829399 tfbsConsSites V$NRF2_01 score:901, zScore:1.89, srow:69939
25204 chr1 32829394 32829409 tfbsConsSites V$TAL1ALPHAE47_01 score:896, zScore:2.24, srow:69940
25204 chr1 32829394 32829409 tfbsConsSites V$TAL1BETAE47_01 score:875, zScore:2.27, srow:69941
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  • 25 of 33 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25204 cellmeth_recounts PrEC: 8, LNCaP: 30, DU145: 1
25204 cellmeth_diffreps_PrECvsDU145 A=11, B=0, Length=200, Event=Down, log2FC=-Inf, padj=0.00313959514768542
25204 cellmeth_diffreps_LNCaPvsDU145 A=27.8, B=0.94, Length=380, Event=Down, log2FC=-4.89, padj=5.16679192666264e-06
25204 cellexp id=ENSG00000162526, name=TSSK3, PrEC=1, str=7, LNCaP=28, str=12, DU145=6, str=3
25204 cellexp id=ENSG00000225828, name=FAM229A, PrEC=23, str=50, LNCaP=219, str=74, DU145=69, str=30
25204 tcgaexp gene=TSSK3, entrez=81629, pos=chr1:32827862-32829924(+), B=37, L=33, M=35, H=47
25204 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305