DMR Stats | |
---|---|
Position | chr1:33358401-33358550 (View on UCSC) |
Width | 150bp |
Genomic Context | intron |
Nearest Genes | HPCA (0bp away) |
ANODEV p-value | 0.00430043782056 |
Frequencies | Benign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 6.0 (66.67 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
25206 | HPCA | 604 | uc001bwh.3 | chr1 | 33352098 | 33360247 | + | 150 | 100.0 | 0.18 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
25206 | chr1 | 33358470 | 33359449 | cpgIsland | CpG: 89 | length:980, cpgNum:89, gcNum:675, perCpg:18.2, perGc:68.9, obsExp:0.79, srow:828 |
25206 | chr1 | 33356470 | 33358469 | cpgShore | — | values(x.gr)[overs$srow, ]:1487 |
25206 | chr1 | 33358481 | 33358497 | phastConsElements100way | lod=14 | score:255, srow:136956 |
25206 | chr1 | 33358483 | 33358502 | tfbsConsSites | V$ARNT_02 | score:803, zScore:2.15, srow:71188 |
25206 | chr1 | 33358483 | 33358502 | tfbsConsSites | V$MYCMAX_03 | score:831, zScore:2.38, srow:71189 |
25206 | chr1 | 33358486 | 33358499 | tfbsConsSites | V$MYCMAX_01 | score:817, zScore:2.02, srow:71190 |
25206 | chr1 | 33358487 | 33358498 | tfbsConsSites | V$NMYC_01 | score:945, zScore:2.65, srow:71191 |
25206 | chr1 | 33358489 | 33358496 | tfbsConsSites | V$USF_C | score:974, zScore:2.3, srow:71192 |
25206 | chr1 | 33358489 | 33358510 | tfbsConsSites | V$HEN1_02 | score:777, zScore:2.05, srow:71193 |
25206 | chr1 | 33358126 | 33358795 | wgEncodeRegDnaseClusteredV2 | 71 | score:1000, srow:27000 |
25206 | chr1 | 33358104 | 33359452 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:510, expCount:3, expNums:36,38,43, expScores:231,200,510, srow:97678 |
25206 | chr1 | 33358306 | 33358915 | wgEncodeRegTfbsClusteredV3 | SP4 | score:237, expCount:1, expNums:155, expScores:237, srow:97679 |
25206 | chr1 | 33358334 | 33358689 | wgEncodeRegTfbsClusteredV3 | MAX | score:642, expCount:3, expNums:223,352,511, expScores:461,642,243, srow:97680 |
25206 | chr1 | 33358355 | 33358665 | wgEncodeRegTfbsClusteredV3 | PAX5 | score:283, expCount:2, expNums:100,101, expScores:283,153, srow:97681 |
25206 | chr1 | 33358365 | 33358860 | wgEncodeRegTfbsClusteredV3 | HMGN3 | score:145, expCount:1, expNums:501, expScores:145, srow:97682 |
25206 | chr1 | 33358371 | 33358754 | wgEncodeRegTfbsClusteredV3 | MYC | score:150, expCount:2, expNums:347,487, expScores:145,150, srow:97683 |
25206 | chr1 | 33358388 | 33358697 | wgEncodeRegTfbsClusteredV3 | BHLHE40 | score:203, expCount:1, expNums:472, expScores:203, srow:97684 |
25206 | chr1 | 33358393 | 33358587 | wgEncodeRegTfbsClusteredV3 | E2F6 | score:327, expCount:2, expNums:215,495, expScores:327,319, srow:97685 |
25206 | chr1 | 33358401 | 33358640 | wgEncodeRegTfbsClusteredV3 | USF1 | score:143, expCount:1, expNums:161, expScores:143, srow:97686 |
25206 | chr1 | 33358406 | 33358765 | wgEncodeRegTfbsClusteredV3 | IRF1 | score:155, expCount:1, expNums:506, expScores:155, srow:97687 |
25206 | chr1 | 33358412 | 33359195 | wgEncodeRegTfbsClusteredV3 | CTCF | score:1000, expCount:89, expNums:2,5,12,14,16,18,20,24,35,37,39,42,44,48,49,72,137,174,213,262,267,290,463,493,595,597,598,601,603,604,605,606,607,609,615,618,621,627,628,629,630,631,635,636,639,640,641,642,643,644,645,646,647,648,650,651,652,653,654,655,656,657,658,659,660,661,662,663,665,667,668,669,671,672,673,674,675,676,677,678,679,680,682,683,684,685,686,687,688, expScores:415,1000,193,158,342,322,905,207,160,325,150,587,335,952,770,464,1000,1000,1000,544,155,268,1000,446,404,218,290,375,154,501,234,523,129,830,116,115,272,806,433,434,322,309,181,181,232,128,172,327,198,136,135,232,169,118,509,523,729,725,602,689,216,167,141,201,104,108,297,126,237,282,124,262,167,197,223,149,215,383,511,112,217,167,223,272,92,118,172,414,846, srow:97688 |
25206 | chr1 | 33358421 | 33358790 | wgEncodeRegTfbsClusteredV3 | MAZ | score:243, expCount:1, expNums:512, expScores:243, srow:97689 |
25206 | chr1 | 33358422 | 33358731 | wgEncodeRegTfbsClusteredV3 | POU2F2 | score:939, expCount:2, expNums:106,125, expScores:939,527, srow:97690 |
25206 | chr1 | 33358425 | 33358833 | wgEncodeRegTfbsClusteredV3 | YY1 | score:180, expCount:2, expNums:119,162, expScores:169,180, srow:97691 |
25206 | chr1 | 33358431 | 33358754 | wgEncodeRegTfbsClusteredV3 | SP1 | score:145, expCount:1, expNums:153, expScores:145, srow:97692 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
25206 | cellmeth_recounts | PrEC: 3, LNCaP: 112, DU145: 0 | |
25206 | cellmeth_diffreps_PrECvsLNCaP | A=5, B=227, Length=1420, Event=Up, log2FC=5.5, padj=0 | |
25206 | cellmeth_diffreps_LNCaPvsDU145 | A=254.43, B=0, Length=1620, Event=Down, log2FC=-Inf, padj=0 | |
25206 | cellexp | id=ENSG00000121905, name=HPCA, PrEC=5, str=14, LNCaP=9, str=6, DU145=44, str=19 | |
25206 | tcgaexp | gene=HPCA, entrez=3208, pos=chr1:33352098-33360247(+), B=20, L=12, M=15, H=11 | |
25206 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |