DMR 25286 chr1:44883101-44883650 (550bp)

DMR Stats
Positionchr1:44883101-44883650 (View on UCSC)
Width550bp
Genomic Contextintron
Nearest GenesRNF220 (0bp away)
ANODEV p-value0.00101138897996
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25286 RNF220 786 uc001clv.1 chr1 44870960 45117396 + 550 100.0 0.27 0 0.0 E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0) 0.0
25286 RNF220 786 uc001clw.1 chr1 44871050 45117396 + 550 100.0 0.46 0 0.0 E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25286 chr1 44883137 44884272 cpgIsland CpG: 110 length:1136, cpgNum:110, gcNum:770, perCpg:19.4, perGc:67.8, obsExp:0.84, srow:1025
25286 chr1 44881137 44883136 cpgShore — values(x.gr)[overs$srow, ]:1861
25286 chr1 44883093 44883170 phastConsElements100way lod=353 score:574, srow:196716
25286 chr1 44883200 44883203 phastConsElements100way lod=13 score:247, srow:196717
25286 chr1 44883226 44883229 phastConsElements100way lod=25 score:312, srow:196718
25286 chr1 44883232 44883279 phastConsElements100way lod=272 score:548, srow:196719
25286 chr1 44883284 44883300 phastConsElements100way lod=45 score:370, srow:196720
25286 chr1 44883311 44883371 phastConsElements100way lod=249 score:540, srow:196721
25286 chr1 44883373 44883381 phastConsElements100way lod=31 score:333, srow:196722
25286 chr1 44883393 44883433 phastConsElements100way lod=223 score:529, srow:196723
25286 chr1 44883586 44883591 phastConsElements100way lod=13 score:247, srow:196724
25286 chr1 44883096 44883105 tfbsConsSites V$GATA1_01 score:948, zScore:1.87, srow:108643
25286 chr1 44883116 44883130 tfbsConsSites V$SRF_C score:787, zScore:1.73, srow:108644
25286 chr1 44883282 44883301 tfbsConsSites V$YY1_02 score:804, zScore:2.36, srow:108645
25286 chr1 44883284 44883311 tfbsConsSites V$PAX5_01 score:821, zScore:2.58, srow:108646
25286 chr1 44883287 44883316 tfbsConsSites V$HOX13_01 score:730, zScore:2.13, srow:108647
25286 chr1 44883353 44883367 tfbsConsSites V$E2F_01 score:804, zScore:2.61, srow:108648
25286 chr1 44883362 44883379 tfbsConsSites V$NF1_Q6 score:878, zScore:1.81, srow:108649
25286 chr1 44883409 44883415 tfbsConsSites V$EN1_01 score:976, zScore:1.85, srow:108650
25286 chr1 44882846 44883395 wgEncodeRegDnaseClusteredV2 64 score:1000, srow:35661
25286 chr1 44883461 44883710 wgEncodeRegDnaseClusteredV2 12 score:376, srow:35662
25286 chr1 44882753 44884537 wgEncodeRegTfbsClusteredV3 EZH2 score:821, expCount:8, expNums:15,17,19,21,36,38,40,43, expScores:253,159,117,509,278,240,270,405, srow:126987
25286 chr1 44882797 44883518 wgEncodeRegTfbsClusteredV3 KAP1 score:421, expCount:2, expNums:365,588, expScores:421,308, srow:126988
25286 chr1 44882900 44883569 wgEncodeRegTfbsClusteredV3 RBBP5 score:260, expCount:1, expNums:8, expScores:260, srow:126989
25286 chr1 44882908 44883397 wgEncodeRegTfbsClusteredV3 TAF1 score:171, expCount:1, expNums:157, expScores:171, srow:126990
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  • 25 of 30 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25286 cellmeth_recounts PrEC: 91, LNCaP: 1876, DU145: 31
25286 cellmeth_diffreps_PrECvsLNCaP A=141, B=2026, Length=1440, Event=Up, log2FC=3.84, padj=0
25286 cellmeth_diffreps_PrECvsDU145 A=126, B=15, Length=480, Event=Down, log2FC=-3.07, padj=0
25286 cellmeth_diffreps_LNCaPvsDU145 A=2165.89, B=41.16, Length=1440, Event=Down, log2FC=-5.72, padj=0
25286 cellexp id=ENSG00000187147, name=RNF220, PrEC=2520, str=1177, LNCaP=2966, str=2141, DU145=1705, str=2230
25286 tcgameth site:cg00069860, B=0.32, L=0.5, H=0.42
25286 tcgameth site:cg08094291, B=0.39, L=0.51, H=0.45
25286 tcgameth site:cg18180569, B=0.35, L=0.56, H=0.52
25286 tcgaexp gene=RNF220, entrez=55182, pos=chr1:44870960-45117396(+), B=3160, L=3453, M=3424, H=3286
25286 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305