DMR 25290 chr1:45251751-45252450 (700bp)

DMR Stats
Positionchr1:45251751-45252450 (View on UCSC)
Width700bp
Genomic Contextexon
Nearest GenesBEST4 (0bp away)
ANODEV p-value3.52872498114e-06
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25290 BEST4 796 uc001cmm.3 chr1 45249257 45253426 - 700 100.0 0.04 0 0.0 E1 (0), I1 (0), E2 (0), I2 (11.86), E3 (33.43), I3 (33.57), E4 (21.43), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25290 chr1 45251766 45251766 cosmic COSM189165 srow:30206
25290 chr1 45251772 45251772 cosmic COSM1296486 srow:30207
25290 chr1 45251864 45251864 cosmic COSM138196 srow:30208
25290 chr1 45252192 45252192 cosmic COSM398124 srow:30209
25290 chr1 45252299 45252299 cosmic COSM1342997 srow:30210
25290 chr1 45252341 45252341 cosmic COSM910063 srow:30211
25290 chr1 45251963 45252292 cpgIsland CpG: 38 length:330, cpgNum:38, gcNum:239, perCpg:23, perGc:72.4, obsExp:0.88, srow:1034
25290 chr1 45250353 45251962 cpgShore — values(x.gr)[overs$srow, ]:1878
25290 chr1 45252293 45254292 cpgShore — values(x.gr)[overs$srow, ]:1879
25290 chr1 45251278 45252330 oreganno OREG0013447 id:OREG0013447, srow:775
25290 chr1 45251753 45251757 phastConsElements100way lod=35 score:345, srow:198930
25290 chr1 45251762 45251763 phastConsElements100way lod=32 score:337, srow:198931
25290 chr1 45251765 45251766 phastConsElements100way lod=15 score:262, srow:198932
25290 chr1 45251768 45251772 phastConsElements100way lod=31 score:333, srow:198933
25290 chr1 45251774 45251775 phastConsElements100way lod=30 score:330, srow:198934
25290 chr1 45251777 45251780 phastConsElements100way lod=26 score:316, srow:198935
25290 chr1 45251783 45251784 phastConsElements100way lod=12 score:240, srow:198936
25290 chr1 45251786 45251787 phastConsElements100way lod=29 score:327, srow:198937
25290 chr1 45251789 45251790 phastConsElements100way lod=30 score:330, srow:198938
25290 chr1 45251795 45251796 phastConsElements100way lod=16 score:268, srow:198939
25290 chr1 45251798 45251805 phastConsElements100way lod=58 score:395, srow:198940
25290 chr1 45251807 45251826 phastConsElements100way lod=234 score:534, srow:198941
25290 chr1 45251831 45251832 phastConsElements100way lod=45 score:370, srow:198942
25290 chr1 45251834 45251852 phastConsElements100way lod=193 score:514, srow:198943
25290 chr1 45251855 45251868 phastConsElements100way lod=94 score:443, srow:198944
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  • 25 of 96 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25290 cellmeth_recounts PrEC: 15, LNCaP: 117, DU145: 0
25290 cellmeth_diffreps_PrECvsLNCaP A=21, B=86, Length=460, Event=Up, log2FC=2.03, padj=6.10668622411807e-09
25290 cellmeth_diffreps_PrECvsDU145 A=22, B=0, Length=400, Event=Down, log2FC=-Inf, padj=2.6934033431747e-06
25290 cellmeth_diffreps_LNCaPvsDU145 A=94.08, B=0, Length=600, Event=Down, log2FC=-Inf, padj=0
25290 cellexp id=ENSG00000142959, name=BEST4, PrEC=75, str=28, LNCaP=25, str=5, DU145=32, str=11
25290 tcgameth site:cg06170941, B=0.33, L=0.47, H=0.49
25290 tcgaexp gene=BEST4, entrez=266675, pos=chr1:45249257-45253426(-), B=15, L=12, M=8, H=6
25290 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305