DMR 25317 chr1:47694801-47695100 (300bp)

DMR Stats
Positionchr1:47694801-47695100 (View on UCSC)
Width300bp
Genomic Contextpromoter
Nearest GenesTAL1, STIL (0bp away)
ANODEV p-value6.62659293615e-05
FrequenciesBenign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25317 TAL1 850 uc001cqx.2 chr1 47681963 47695443 - 300 100.0 0.25 0 52.33 E1 (77.67), I1 (22.33), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
25317 TAL1 850 uc001cqy.2 chr1 47681963 47697387 - 300 100.0 0.11 0 0.0 E1 (0), I1 (26), E2 (52), I2 (22.33), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) 0.0
25317 TAL1 850 uc001cqz.1 chr1 47689676 47697892 - 300 100.0 0.11 1 0.0 E1 (0), I1 (26), E2 (52), I2 (22.33), E3 (0) 0.0
25317 TAL1 850 uc001cra.1 chr1 47689676 47697892 - 300 100.0 0.03 1 0.0 E1 (0), I1 (100), E2 (0) 0.0
25317 STIL 850 uc001crb.1 chr1 47694868 47779819 - 233 77.67 0.04 1 0.0 E1 (0), I1 (26), E2 (52) 100.0
  • 5 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25317 chr1 47694505 47696504 cpgShore — values(x.gr)[overs$srow, ]:1958
25317 chr1 47694860 47694886 phastConsElements100way lod=121 score:468, srow:211403
25317 chr1 47694903 47694915 phastConsElements100way lod=19 score:285, srow:211404
25317 chr1 47694923 47694928 phastConsElements100way lod=20 score:290, srow:211405
25317 chr1 47694987 47695130 phastConsElements100way lod=600 score:627, srow:211406
25317 chr1 47694869 47694884 tfbsConsSites V$MEF2_01 score:784, zScore:2.27, srow:116278
25317 chr1 47695029 47695036 tfbsConsSites V$E2F_02 score:896, zScore:2.02, srow:116279
25317 chr1 47695029 47695052 tfbsConsSites V$STAT5A_02 score:797, zScore:2.61, srow:116280
25317 chr1 47695044 47695052 tfbsConsSites V$STAT_01 score:947, zScore:2.44, srow:116281
25317 chr1 47695045 47695064 tfbsConsSites V$YY1_02 score:786, zScore:2.06, srow:116282
25317 chr1 47695049 47695062 tfbsConsSites V$GATA1_02 score:879, zScore:2.55, srow:116283
25317 chr1 47695052 47695060 tfbsConsSites V$GATA3_01 score:937, zScore:1.95, srow:116284
25317 chr1 47693266 47695155 wgEncodeRegDnaseClusteredV2 49 score:853, srow:37444
25317 chr1 47694115 47695189 wgEncodeRegTfbsClusteredV3 RBBP5 score:230, expCount:1, expNums:33, expScores:224, srow:135395
25317 chr1 47694315 47695631 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:10, expNums:229,520,521,522,523,525,526,583,619,622, expScores:508,208,235,431,481,231,394,698,116,334, srow:135396
25317 chr1 47694318 47697884 wgEncodeRegTfbsClusteredV3 EZH2 score:1000, expCount:9, expNums:3,6,15,17,19,36,38,40,43, expScores:207,293,279,269,107,220,230,266,310, srow:135397
25317 chr1 47694365 47694940 wgEncodeRegTfbsClusteredV3 KDM5B score:216, expCount:1, expNums:31, expScores:216, srow:135399
25317 chr1 47694397 47694906 wgEncodeRegTfbsClusteredV3 SAP30 score:135, expCount:1, expNums:34, expScores:135, srow:135400
25317 chr1 47694499 47695002 wgEncodeRegTfbsClusteredV3 CHD1 score:274, expCount:1, expNums:23, expScores:274, srow:135401
25317 chr1 47694586 47695185 wgEncodeRegTfbsClusteredV3 CTBP2 score:129, expCount:1, expNums:348, expScores:129, srow:135402
25317 chr1 47694719 47695068 wgEncodeRegTfbsClusteredV3 HDAC2 score:130, expCount:1, expNums:27, expScores:130, srow:135403
25317 chr1 47694758 47695281 wgEncodeRegTfbsClusteredV3 MYC score:215, expCount:4, expNums:485,486,487,488, expScores:125,122,214,215, srow:135404
25317 chr1 47694771 47695286 wgEncodeRegTfbsClusteredV3 PML score:241, expCount:1, expNums:227, expScores:241, srow:135405
25317 chr1 47694773 47695575 wgEncodeRegTfbsClusteredV3 GATA1 score:410, expCount:1, expNums:582, expScores:214, srow:135406
25317 chr1 47694780 47695086 wgEncodeRegTfbsClusteredV3 PHF8 score:375, expCount:1, expNums:30, expScores:375, srow:135407
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  • 25 of 42 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25317 cellmeth_recounts PrEC: 17, LNCaP: 94, DU145: 12
25317 cellmeth_diffreps_PrECvsLNCaP A=27, B=235, Length=860, Event=Up, log2FC=3.12, padj=0
25317 cellmeth_diffreps_LNCaPvsDU145 A=310.02, B=15.9, Length=1300, Event=Down, log2FC=-4.29, padj=0
25317 cellexp id=ENSG00000162367, name=TAL1, PrEC=0, str=0, LNCaP=2, str=0, DU145=9, str=3
25317 cellexp id=ENSG00000226252, name=RP1-18D14.7, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0
25317 tcgameth site:cg10026317, B=0.58, L=0.77, H=0.75
25317 tcgaexp gene=STIL, entrez=6491, pos=chr1:47694868-47779819(-), B=204, L=429, M=420, H=582
25317 tcgaexp gene=TAL1, entrez=6886, pos=chr1:47681963-47697892(-), B=122, L=76, M=86, H=94
25317 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305