DMR 25612 chr1:151103501-151104450 (950bp)
| DMR Stats | |
|---|---|
| Position | chr1:151103501-151104450 (View on UCSC) |
| Width | 950bp |
| Genomic Context | 3' end |
| Nearest Genes | SEMA6C (0bp away) |
| ANODEV p-value | 6.8136838709e-05 |
| Frequencies | Benign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25612 | SEMA6C | 1653 | uc001ewu.3 | chr1 | 151104163 | 151119140 | - | 288 | 30.32 | 0.04 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (30.32) | 100.0 |
| 25612 | SEMA6C | 1653 | uc001ewv.3 | chr1 | 151104163 | 151119140 | - | 288 | 30.32 | 0.04 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (30.32) | 100.0 |
| 25612 | SEMA6C | 1653 | uc001eww.3 | chr1 | 151104163 | 151119140 | - | 288 | 30.32 | 1.04 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (30.32) | 100.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 25612 | chr1 | 151103686 | 151106100 | cpgIsland | CpG: 191 | length:2415, cpgNum:191, gcNum:1550, perCpg:15.8, perGc:64.2, obsExp:0.77, srow:1674 |
| 25612 | chr1 | 151101686 | 151103685 | cpgShore | — | values(x.gr)[overs$srow, ]:3069 |
| 25612 | chr1 | 151103501 | 151103509 | phastConsElements100way | lod=19 | score:285, srow:529935 |
| 25612 | chr1 | 151103694 | 151103696 | phastConsElements100way | lod=16 | score:268, srow:529936 |
| 25612 | chr1 | 151103698 | 151103703 | phastConsElements100way | lod=16 | score:268, srow:529937 |
| 25612 | chr1 | 151103772 | 151103775 | phastConsElements100way | lod=14 | score:255, srow:529938 |
| 25612 | chr1 | 151103827 | 151103831 | phastConsElements100way | lod=20 | score:290, srow:529939 |
| 25612 | chr1 | 151103862 | 151103865 | phastConsElements100way | lod=18 | score:280, srow:529940 |
| 25612 | chr1 | 151103997 | 151104004 | phastConsElements100way | lod=22 | score:300, srow:529941 |
| 25612 | chr1 | 151104194 | 151104211 | phastConsElements100way | lod=37 | score:351, srow:529942 |
| 25612 | chr1 | 151104337 | 151104342 | phastConsElements100way | lod=15 | score:262, srow:529943 |
| 25612 | chr1 | 151104376 | 151104411 | phastConsElements100way | lod=59 | score:397, srow:529944 |
| 25612 | chr1 | 151103823 | 151103837 | tfbsConsSites | V$SPZ1_01 | score:863, zScore:1.66, srow:300796 |
| 25612 | chr1 | 151104211 | 151104226 | tfbsConsSites | V$MEF2_01 | score:753, zScore:1.64, srow:300797 |
| 25612 | chr1 | 151104297 | 151104309 | tfbsConsSites | V$IK1_01 | score:851, zScore:1.73, srow:300798 |
| 25612 | chr1 | 151104298 | 151104305 | tfbsConsSites | V$STAT6_02 | score:1000, zScore:1.72, srow:300799 |
| 25612 | chr1 | 151104407 | 151104424 | tfbsConsSites | V$NF1_Q6 | score:884, zScore:1.9, srow:300800 |
| 25612 | chr1 | 151103586 | 151103655 | wgEncodeRegDnaseClusteredV2 | 2 | score:190, srow:70042 |
| 25612 | chr1 | 151103681 | 151104015 | wgEncodeRegDnaseClusteredV2 | 96 | score:1000, srow:70043 |
| 25612 | chr1 | 151104021 | 151104375 | wgEncodeRegDnaseClusteredV2 | 8 | score:342, srow:70044 |
| 25612 | chr1 | 151104386 | 151105775 | wgEncodeRegDnaseClusteredV2 | 38 | score:1000, srow:70045 |
| 25612 | chr1 | 151103364 | 151104033 | wgEncodeRegTfbsClusteredV3 | RBBP5 | score:176, expCount:1, expNums:8, expScores:176, srow:248179 |
| 25612 | chr1 | 151103502 | 151103991 | wgEncodeRegTfbsClusteredV3 | TAF1 | score:160, expCount:1, expNums:157, expScores:160, srow:248180 |
| 25612 | chr1 | 151103521 | 151104246 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:433, expCount:6, expNums:146,147,332,334,336,338, expScores:433,415,265,200,357,265, srow:248181 |
| 25612 | chr1 | 151103530 | 151103904 | wgEncodeRegTfbsClusteredV3 | CTCF | score:188, expCount:5, expNums:643,659,661,662,682, expScores:140,188,125,183,127, srow:248182 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 25612 | cellmeth_recounts | PrEC: 15, LNCaP: 1613, DU145: 19 |  |
| 25612 | cellmeth_diffreps_PrECvsLNCaP | A=1164, B=5542, Length=3100, Event=Up, log2FC=2.25, padj=0 |  |
| 25612 | cellmeth_diffreps_PrECvsDU145 | A=1161, B=58, Length=1940, Event=Down, log2FC=-4.32, padj=0 |  |
| 25612 | cellmeth_diffreps_LNCaPvsDU145 | A=5924.65, B=72.96, Length=3100, Event=Down, log2FC=-6.34, padj=0 |  |
| 25612 | cellexp | id=ENSG00000143434, name=SEMA6C, PrEC=118, str=245, LNCaP=266, str=151, DU145=519, str=196 |  |
| 25612 | cellexp | id=ENSG00000261168, name=RP11-68I18.10, PrEC=2, str=5, LNCaP=8, str=5, DU145=18, str=7 |  |
| 25612 | tcgameth | site:cg04065086, B=0.28, L=0.5, H=0.53 |  |
| 25612 | tcgameth | site:cg07119434, B=0.21, L=0.51, H=0.51 |  |
| 25612 | tcgameth | site:cg07371589, B=0.36, L=0.62, H=0.63 |  |
| 25612 | tcgameth | site:cg19706516, B=0.13, L=0.36, H=0.4 |  |
| 25612 | tcgaexp | gene=SEMA6C, entrez=10500, pos=chr1:151104163-151119140(-), B=425, L=315, M=380, H=392 |  |
| 25612 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |