DMR Stats | |
---|---|
Position | chr2:45171251-45172300 (View on UCSC) |
Width | 1050bp |
Genomic Context | 3' end |
Nearest Genes | SIX3 (0bp away) |
ANODEV p-value | 2.00551284512e-06 |
Frequencies | Benign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 7.0 (77.78 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
26174 | SIX3 | 16293 | uc002run.2 | chr2 | 45169037 | 45173216 | + | 1050 | 100.0 | 0.09 | 0 | 0.0 | E1 (0), I1 (43.43), E2 (56.57) | 8.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
26174 | chr2 | 45171841 | 45171841 | cosmic | COSM300499 | srow:645047 |
26174 | chr2 | 45171878 | 45171878 | cosmic | COSM1306822 | srow:645048 |
26174 | chr2 | 45169506 | 45171884 | cpgIsland | CpG: 171 | length:2379, cpgNum:171, gcNum:1484, perCpg:14.4, perGc:62.4, obsExp:0.74, srow:14933 |
26174 | chr2 | 45171885 | 45173884 | cpgShore | — | values(x.gr)[overs$srow, ]:26857 |
26174 | chr2 | 45171689 | 45171691 | phastConsElements100way | lod=13 | score:247, srow:4513291 |
26174 | chr2 | 45171697 | 45171808 | phastConsElements100way | lod=942 | score:671, srow:4513292 |
26174 | chr2 | 45171810 | 45171920 | phastConsElements100way | lod=1083 | score:685, srow:4513293 |
26174 | chr2 | 45171968 | 45172046 | phastConsElements100way | lod=172 | score:503, srow:4513294 |
26174 | chr2 | 45172052 | 45172078 | phastConsElements100way | lod=64 | score:405, srow:4513295 |
26174 | chr2 | 45172087 | 45172088 | phastConsElements100way | lod=14 | score:255, srow:4513296 |
26174 | chr2 | 45172094 | 45172116 | phastConsElements100way | lod=48 | score:377, srow:4513297 |
26174 | chr2 | 45172120 | 45172378 | phastConsElements100way | lod=1257 | score:700, srow:4513298 |
26174 | chr2 | 45171378 | 45171391 | tfbsConsSites | V$RREB1_01 | score:809, zScore:1.7, srow:2615664 |
26174 | chr2 | 45171705 | 45171717 | tfbsConsSites | V$ZID_01 | score:942, zScore:3.36, srow:2615665 |
26174 | chr2 | 45171735 | 45171762 | tfbsConsSites | V$PAX5_02 | score:772, zScore:1.84, srow:2615666 |
26174 | chr2 | 45171744 | 45171771 | tfbsConsSites | V$PAX5_01 | score:780, zScore:1.95, srow:2615667 |
26174 | chr2 | 45171749 | 45171769 | tfbsConsSites | V$PAX4_01 | score:808, zScore:1.84, srow:2615668 |
26174 | chr2 | 45171750 | 45171771 | tfbsConsSites | V$HEN1_01 | score:772, zScore:1.66, srow:2615669 |
26174 | chr2 | 45171751 | 45171768 | tfbsConsSites | V$AP4_01 | score:812, zScore:1.68, srow:2615670 |
26174 | chr2 | 45171763 | 45171790 | tfbsConsSites | V$PAX5_01 | score:782, zScore:1.98, srow:2615671 |
26174 | chr2 | 45171764 | 45171781 | tfbsConsSites | V$AHR_01 | score:769, zScore:1.74, srow:2615672 |
26174 | chr2 | 45171773 | 45171794 | tfbsConsSites | V$TCF11MAFG_01 | score:754, zScore:1.9, srow:2615673 |
26174 | chr2 | 45171822 | 45171842 | tfbsConsSites | V$NRSF_01 | score:712, zScore:1.75, srow:2615674 |
26174 | chr2 | 45171826 | 45171839 | tfbsConsSites | V$ATF_01 | score:827, zScore:1.74, srow:2615675 |
26174 | chr2 | 45171827 | 45171838 | tfbsConsSites | V$CREBP1_Q2 | score:840, zScore:1.7, srow:2615676 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
26174 | cellmeth_recounts | PrEC: 63, LNCaP: 515, DU145: 78 | |
26174 | cellmeth_diffreps_PrECvsLNCaP | A=63, B=375, Length=780, Event=Up, log2FC=2.57, padj=0 | |
26174 | cellmeth_diffreps_PrECvsDU145 | A=42, B=11, Length=340, Event=Down, log2FC=-1.93, padj=0.000523743958488681 | |
26174 | cellmeth_diffreps_PrECvsDU145 | A=2, B=24, Length=260, Event=Up, log2FC=3.58, padj=0.000159268381260165 | |
26174 | cellmeth_diffreps_LNCaPvsDU145 | A=422.27, B=45.84, Length=920, Event=Down, log2FC=-3.2, padj=0 | |
26174 | cellexp | id=ENSG00000138083, name=SIX3, PrEC=0, str=2, LNCaP=7, str=3, DU145=246, str=65 | |
26174 | tcgameth | site:cg00097146, B=0.19, L=0.58, H=0.55 | |
26174 | tcgameth | site:cg02120584, B=0.51, L=0.71, H=0.68 | |
26174 | tcgameth | site:cg02649597, B=0.24, L=0.52, H=0.51 | |
26174 | tcgameth | site:cg03717442, B=0.8, L=0.87, H=0.87 | |
26174 | tcgaexp | gene=SIX3, entrez=6496, pos=chr2:45169037-45173216(+), B=0, L=0, M=1, H=2 |