DMR 26407 chr2:111875201-111876150 (950bp)
| DMR Stats | |
|---|---|
| Position | chr2:111875201-111876150 (View on UCSC) |
| Width | 950bp |
| Genomic Context | 3' end |
| Nearest Genes | ACOXL (0bp away) |
| ANODEV p-value | 0.000651966405815 |
| Frequencies | Benign: 1.0 (14.29%), Low: 6.0 (100.0%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26407 | ACOXL | 16851 | uc010yxk.1 | chr2 | 111490150 | 111875799 | + | 599 | 63.05 | 0.31 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (63.05) | 100.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 26407 | chr2 | 111875316 | 111875316 | cosmic | COSM440983 | srow:667181 |
| 26407 | chr2 | 111875207 | 111880965 | cpgIsland | CpG: 504 | length:5759, cpgNum:504, gcNum:3553, perCpg:17.5, perGc:61.7, obsExp:0.92, srow:15379 |
| 26407 | chr2 | 111873207 | 111875206 | cpgShore | — | values(x.gr)[overs$srow, ]:27692 |
| 26407 | chr2 | 111874191 | 111875208 | oreganno | OREG0014889 | id:OREG0014889, srow:12821 |
| 26407 | chr2 | 111875183 | 111875209 | phastConsElements100way | lod=142 | score:484, srow:4725042 |
| 26407 | chr2 | 111875214 | 111875242 | phastConsElements100way | lod=115 | score:463, srow:4725043 |
| 26407 | chr2 | 111875244 | 111875257 | phastConsElements100way | lod=57 | score:394, srow:4725044 |
| 26407 | chr2 | 111875269 | 111875275 | phastConsElements100way | lod=22 | score:300, srow:4725045 |
| 26407 | chr2 | 111875280 | 111875284 | phastConsElements100way | lod=16 | score:268, srow:4725046 |
| 26407 | chr2 | 111875286 | 111875287 | phastConsElements100way | lod=24 | score:308, srow:4725047 |
| 26407 | chr2 | 111875310 | 111875313 | phastConsElements100way | lod=32 | score:337, srow:4725048 |
| 26407 | chr2 | 111875316 | 111875320 | phastConsElements100way | lod=23 | score:304, srow:4725049 |
| 26407 | chr2 | 111875382 | 111875389 | phastConsElements100way | lod=14 | score:255, srow:4725050 |
| 26407 | chr2 | 111875751 | 111875763 | phastConsElements100way | lod=33 | score:340, srow:4725051 |
| 26407 | chr2 | 111875767 | 111875778 | phastConsElements100way | lod=32 | score:337, srow:4725052 |
| 26407 | chr2 | 111875784 | 111875793 | phastConsElements100way | lod=17 | score:274, srow:4725053 |
| 26407 | chr2 | 111875814 | 111875817 | phastConsElements100way | lod=16 | score:268, srow:4725054 |
| 26407 | chr2 | 111875895 | 111875905 | phastConsElements100way | lod=29 | score:327, srow:4725055 |
| 26407 | chr2 | 111876039 | 111876044 | phastConsElements100way | lod=14 | score:255, srow:4725056 |
| 26407 | chr2 | 111876101 | 111876108 | phastConsElements100way | lod=14 | score:255, srow:4725057 |
| 26407 | chr2 | 111875210 | 111875228 | tfbsConsSites | V$PAX2_01 | score:810, zScore:2.57, srow:2730902 |
| 26407 | chr2 | 111875250 | 111875262 | tfbsConsSites | V$CEBP_01 | score:906, zScore:1.89, srow:2730903 |
| 26407 | chr2 | 111875285 | 111875294 | tfbsConsSites | V$NFKAPPAB50_01 | score:876, zScore:1.94, srow:2730904 |
| 26407 | chr2 | 111875286 | 111875295 | tfbsConsSites | V$CREL_01 | score:893, zScore:1.74, srow:2730905 |
| 26407 | chr2 | 111875457 | 111875476 | tfbsConsSites | V$PPARA_01 | score:758, zScore:2.11, srow:2730906 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 26407 | cellmeth_recounts | PrEC: 124, LNCaP: 553, DU145: 27 |  |
| 26407 | cellmeth_diffreps_PrECvsLNCaP | A=60, B=340, Length=920, Event=Up, log2FC=2.5, padj=0 |  |
| 26407 | cellmeth_diffreps_PrECvsDU145 | A=57, B=10, Length=400, Event=Down, log2FC=-2.51, padj=1.52947499576406e-07 |  |
| 26407 | cellmeth_diffreps_PrECvsDU145 | A=1083, B=57, Length=1940, Event=Down, log2FC=-4.25, padj=0 |  |
| 26407 | cellmeth_diffreps_LNCaPvsDU145 | A=2014.08, B=70.16, Length=3000, Event=Down, log2FC=-4.84, padj=0 |  |
| 26407 | cellexp | id=ENSG00000153093, name=ACOXL, PrEC=2, str=5, LNCaP=81, str=81, DU145=140, str=290 |  |
| 26407 | tcgameth | site:cg03171003, B=0.64, L=0.72, H=0.72 |  |
| 26407 | tcgameth | site:cg04202892, B=0.6, L=0.69, H=0.71 |  |
| 26407 | tcgameth | site:cg04780086, B=0.51, L=0.65, H=0.62 |  |
| 26407 | tcgameth | site:cg18646521, B=0.44, L=0.57, H=0.56 |  |
| 26407 | tcgameth | site:cg27624162, B=0.54, L=0.68, H=0.66 |  |
| 26407 | tcgaexp | gene=ACOXL, entrez=55289, pos=chr2:111490150-111875799(+), B=168, L=194, M=182, H=157 |  |
| 26407 | tcgaexp | gene=RGPD5, entrez=84220, pos=chr2:110561556-113179689(+), B=246, L=163, M=204, H=232 |  |