DMR 27108 chr3:124860351-124861100 (750bp)
| DMR Stats | |
|---|---|
| Position | chr3:124860351-124861100 (View on UCSC) |
| Width | 750bp |
| Genomic Context | intron |
| Nearest Genes | SLC12A8 (0bp away) |
| ANODEV p-value | 3.34240443869e-09 |
| Frequencies | Benign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27108 | SLC12A8 | 20639 | uc003ehv.4 | chr3 | 124801480 | 124931609 | - | 750 | 100.0 | 0.1 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) | 0.0 |
| 27108 | SLC12A8 | 20639 | uc003ehw.4 | chr3 | 124801480 | 124998091 | - | 750 | 100.0 | 0.07 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) | 0.0 |
| 27108 | SLC12A8 | 20639 | uc010hrz.1 | chr3 | 124837613 | 124931609 | - | 750 | 100.0 | 0.35 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 27108 | chr3 | 124860570 | 124861019 | cpgIsland | CpG: 48 | length:450, cpgNum:48, gcNum:313, perCpg:21.3, perGc:69.6, obsExp:0.89, srow:18841 |
| 27108 | chr3 | 124858570 | 124860569 | cpgShore | — | values(x.gr)[overs$srow, ]:34046 |
| 27108 | chr3 | 124861020 | 124863019 | cpgShore | — | values(x.gr)[overs$srow, ]:34047 |
| 27108 | chr3 | 124860406 | 124860424 | phastConsElements100way | lod=20 | score:290, srow:6099486 |
| 27108 | chr3 | 124860493 | 124860499 | phastConsElements100way | lod=21 | score:295, srow:6099487 |
| 27108 | chr3 | 124860509 | 124860510 | phastConsElements100way | lod=12 | score:240, srow:6099488 |
| 27108 | chr3 | 124860625 | 124860644 | phastConsElements100way | lod=61 | score:400, srow:6099489 |
| 27108 | chr3 | 124860647 | 124860661 | phastConsElements100way | lod=43 | score:366, srow:6099490 |
| 27108 | chr3 | 124860666 | 124860685 | phastConsElements100way | lod=59 | score:397, srow:6099491 |
| 27108 | chr3 | 124860688 | 124860697 | phastConsElements100way | lod=54 | score:388, srow:6099492 |
| 27108 | chr3 | 124860706 | 124860717 | phastConsElements100way | lod=25 | score:312, srow:6099493 |
| 27108 | chr3 | 124860720 | 124860723 | phastConsElements100way | lod=13 | score:247, srow:6099494 |
| 27108 | chr3 | 124860729 | 124860742 | phastConsElements100way | lod=55 | score:390, srow:6099495 |
| 27108 | chr3 | 124860753 | 124860772 | phastConsElements100way | lod=91 | score:440, srow:6099496 |
| 27108 | chr3 | 124860776 | 124860785 | phastConsElements100way | lod=49 | score:379, srow:6099497 |
| 27108 | chr3 | 124860659 | 124860672 | tfbsConsSites | V$CEBPB_02 | score:849, zScore:1.7, srow:3537655 |
| 27108 | chr3 | 124860733 | 124860742 | tfbsConsSites | V$NRF2_01 | score:907, zScore:1.98, srow:3537656 |
| 27108 | chr3 | 124860752 | 124860769 | tfbsConsSites | V$IRF7_01 | score:821, zScore:2.12, srow:3537657 |
| 27108 | chr3 | 124860754 | 124860766 | tfbsConsSites | V$IRF2_01 | score:811, zScore:1.85, srow:3537658 |
| 27108 | chr3 | 124860776 | 124860784 | tfbsConsSites | V$STAT_01 | score:961, zScore:2.68, srow:3537659 |
| 27108 | chr3 | 124860326 | 124861315 | wgEncodeRegDnaseClusteredV2 | 89 | score:1000, srow:831610 |
| 27108 | chr3 | 124860142 | 124860552 | wgEncodeRegTfbsClusteredV3 | EBF1 | score:1000, expCount:2, expNums:86,292, expScores:1000,436, srow:2874502 |
| 27108 | chr3 | 124860147 | 124860851 | wgEncodeRegTfbsClusteredV3 | NFIC | score:1000, expCount:1, expNums:97, expScores:1000, srow:2874503 |
| 27108 | chr3 | 124860192 | 124860832 | wgEncodeRegTfbsClusteredV3 | MAZ | score:377, expCount:1, expNums:297, expScores:213, srow:2874504 |
| 27108 | chr3 | 124860203 | 124860718 | wgEncodeRegTfbsClusteredV3 | CEBPB | score:347, expCount:1, expNums:85, expScores:347, srow:2874505 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 27108 | cellmeth_recounts | PrEC: 25, LNCaP: 285, DU145: 17 |  |
| 27108 | cellmeth_diffreps_PrECvsLNCaP | A=0, B=20, Length=280, Event=Up, log2FC=Inf, padj=7.90773854123128e-06 |  |
| 27108 | cellmeth_diffreps_PrECvsLNCaP | A=33, B=205, Length=640, Event=Up, log2FC=2.64, padj=0 |  |
| 27108 | cellmeth_diffreps_LNCaPvsDU145 | A=241.6, B=12.16, Length=940, Event=Down, log2FC=-4.31, padj=0 |  |
| 27108 | cellexp | id=ENSG00000221955, name=SLC12A8, PrEC=1006, str=1530, LNCaP=2202, str=1700, DU145=756, str=610 |  |
| 27108 | tcgameth | site:cg12788878, B=0.26, L=0.53, H=0.52 |  |
| 27108 | tcgameth | site:cg26107890, B=0.32, L=0.74, H=0.72 |  |
| 27108 | tcgameth | site:cg26125625, B=0.26, L=0.5, H=0.48 |  |
| 27108 | tcgaexp | gene=SLC12A8, entrez=84561, pos=chr3:124801480-124998091(-), B=668, L=1221, M=1227, H=1315 |  |