DMR Stats | |
---|---|
Position | chr8:49468251-49469100 (View on UCSC) |
Width | 850bp |
Genomic Context | intergenic |
Nearest Genes | EFCAB1 (154250bp away) |
ANODEV p-value | 4.33801143155e-12 |
Frequencies | Benign: 0.0 (0.0%), Low: 2.0 (33.33%), High: 6.0 (66.67 %) |
Frequent? |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
29893 | chr8 | 49468684 | 49468959 | cpgIsland | CpG: 35 | length:276, cpgNum:35, gcNum:205, perCpg:25.4, perGc:74.3, obsExp:0.93, srow:25664 |
29893 | chr8 | 49466684 | 49468683 | cpgShore | — | values(x.gr)[overs$srow, ]:46455 |
29893 | chr8 | 49468960 | 49470959 | cpgShore | — | values(x.gr)[overs$srow, ]:46456 |
29893 | chr8 | 49468236 | 49468252 | phastConsElements100way | lod=22 | score:300, srow:8825221 |
29893 | chr8 | 49468301 | 49468303 | phastConsElements100way | lod=15 | score:262, srow:8825222 |
29893 | chr8 | 49468316 | 49468322 | phastConsElements100way | lod=17 | score:274, srow:8825223 |
29893 | chr8 | 49468367 | 49468376 | phastConsElements100way | lod=31 | score:333, srow:8825224 |
29893 | chr8 | 49468396 | 49468402 | phastConsElements100way | lod=26 | score:316, srow:8825225 |
29893 | chr8 | 49468422 | 49468440 | phastConsElements100way | lod=33 | score:340, srow:8825226 |
29893 | chr8 | 49468463 | 49468488 | phastConsElements100way | lod=146 | score:487, srow:8825227 |
29893 | chr8 | 49468492 | 49468517 | phastConsElements100way | lod=195 | score:515, srow:8825228 |
29893 | chr8 | 49468521 | 49468664 | phastConsElements100way | lod=733 | score:647, srow:8825229 |
29893 | chr8 | 49468671 | 49468686 | phastConsElements100way | lod=70 | score:414, srow:8825230 |
29893 | chr8 | 49468689 | 49468697 | phastConsElements100way | lod=22 | score:300, srow:8825231 |
29893 | chr8 | 49468774 | 49468941 | phastConsElements100way | lod=1608 | score:724, srow:8825232 |
29893 | chr8 | 49468943 | 49468958 | phastConsElements100way | lod=68 | score:411, srow:8825233 |
29893 | chr8 | 49468963 | 49468990 | phastConsElements100way | lod=139 | score:482, srow:8825234 |
29893 | chr8 | 49469010 | 49469011 | phastConsElements100way | lod=17 | score:274, srow:8825235 |
29893 | chr8 | 49469014 | 49469059 | phastConsElements100way | lod=268 | score:547, srow:8825236 |
29893 | chr8 | 49469061 | 49469068 | phastConsElements100way | lod=41 | score:361, srow:8825237 |
29893 | chr8 | 49469073 | 49469080 | phastConsElements100way | lod=51 | score:383, srow:8825238 |
29893 | chr8 | 49469085 | 49469098 | phastConsElements100way | lod=92 | score:441, srow:8825239 |
29893 | chr8 | 49469100 | 49469106 | phastConsElements100way | lod=48 | score:377, srow:8825240 |
29893 | chr8 | 49468264 | 49468275 | tfbsConsSites | V$IK2_01 | score:953, zScore:2.07, srow:5105197 |
29893 | chr8 | 49468310 | 49468324 | tfbsConsSites | V$OCT1_Q6 | score:855, zScore:2.03, srow:5105198 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
29893 | cellmeth_recounts | PrEC: 3, LNCaP: 396, DU145: 28 | |
29893 | cellmeth_diffreps_PrECvsLNCaP | A=4, B=318, Length=1100, Event=Up, log2FC=6.31, padj=0 | |
29893 | cellmeth_diffreps_LNCaPvsDU145 | A=35.28, B=0.94, Length=400, Event=Down, log2FC=-5.24, padj=4.08953502356965e-08 | |
29893 | cellmeth_diffreps_LNCaPvsDU145 | A=304.68, B=18.71, Length=660, Event=Down, log2FC=-4.03, padj=0 | |
29893 | cellexp | id=ENSG00000253608, name=RP11-770E5.1, PrEC=8, str=27, LNCaP=0, str=0, DU145=0, str=0 | |
29893 | cellexp | id=ENSG00000253688, name=RP11-567J20.2, PrEC=1, str=0, LNCaP=0, str=0, DU145=0, str=0 | |
29893 | tcgameth | site:cg04920358, B=0.07, L=0.47, H=0.4 | |
29893 | tcgameth | site:cg10826197, B=0.03, L=0.33, H=0.38 | |
29893 | tcgameth | site:cg14095438, B=0.16, L=0.56, H=0.51 | |
29893 | tcgameth | site:cg14907769, B=0.18, L=0.62, H=0.57 | |
29893 | tcgameth | site:cg18991611, B=0.07, L=0.59, H=0.54 | |
29893 | tcgameth | site:cg19414967, B=0.33, L=0.67, H=0.66 | |
29893 | tcgameth | site:cg20527270, B=0.1, L=0.67, H=0.56 | |
29893 | tcgameth | site:cg27038634, B=0.27, L=0.55, H=0.55 |