DMR 30507 chr9:112810151-112811000 (850bp)

DMR Stats
Positionchr9:112810151-112811000 (View on UCSC)
Width850bp
Genomic Contextpromoter
Nearest GenesPALM2-AKAP2, AKAP2 (0bp away)
ANODEV p-value3.75652071739e-09
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
30507 PALM2-AKAP2 29903 uc004bei.2 chr9 112542577 112900819 + 850 100.0 0.27 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (100), E9 (0) 0.0
30507 PALM2-AKAP2 29903 uc004bej.4 chr9 112542577 112934791 + 850 100.0 0.47 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (100), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0) 0.0
30507 PALM2-AKAP2 29903 uc004bek.4 chr9 112542577 112934791 + 850 100.0 0.2 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (100), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) 0.0
30507 PALM2-AKAP2 29903 uc004bel.1 chr9 112629647 112900819 + 850 100.0 0.2 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0) 0.0
30507 AKAP2 29903 uc004bem.3 chr9 112810878 112934791 + 123 14.47 0.09 0 100.0 E1 (14.47), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
30507 AKAP2 29903 uc011lwi.2 chr9 112810878 112934791 + 123 14.47 0.07 0 100.0 E1 (14.47), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) 0.0
  • 6 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
30507 chr9 112810859 112811128 cpgIsland CpG: 29 length:270, cpgNum:29, gcNum:212, perCpg:21.5, perGc:78.5, obsExp:0.7, srow:26890
30507 chr9 112808859 112810858 cpgShore — values(x.gr)[overs$srow, ]:48706
30507 chr9 112810144 112810153 phastConsElements100way lod=50 score:381, srow:9411240
30507 chr9 112810160 112810175 phastConsElements100way lod=67 score:410, srow:9411241
30507 chr9 112810183 112810191 phastConsElements100way lod=18 score:280, srow:9411242
30507 chr9 112810195 112810200 phastConsElements100way lod=19 score:285, srow:9411243
30507 chr9 112810234 112810238 phastConsElements100way lod=17 score:274, srow:9411244
30507 chr9 112810255 112810264 phastConsElements100way lod=17 score:274, srow:9411245
30507 chr9 112810856 112810858 phastConsElements100way lod=15 score:262, srow:9411246
30507 chr9 112810899 112810903 phastConsElements100way lod=13 score:247, srow:9411247
30507 chr9 112810907 112810914 phastConsElements100way lod=25 score:312, srow:9411248
30507 chr9 112810929 112810938 phastConsElements100way lod=16 score:268, srow:9411249
30507 chr9 112810150 112810164 tfbsConsSites V$ISRE_01 score:789, zScore:1.83, srow:5454670
30507 chr9 112810224 112810245 tfbsConsSites V$HEN1_01 score:861, zScore:2.99, srow:5454671
30507 chr9 112810826 112810839 tfbsConsSites V$RREB1_01 score:809, zScore:1.7, srow:5454672
30507 chr9 112810926 112810938 tfbsConsSites V$SP1_Q6 score:944, zScore:2.29, srow:5454673
30507 chr9 112810933 112810942 tfbsConsSites V$NFKAPPAB50_01 score:901, zScore:2.28, srow:5454674
30507 chr9 112810945 112810962 tfbsConsSites V$AHR_01 score:765, zScore:1.67, srow:5454675
30507 chr9 112810987 112811004 tfbsConsSites V$AP4_01 score:811, zScore:1.66, srow:5454676
30507 chr9 112809941 112811075 wgEncodeRegDnaseClusteredV2 115 score:1000, srow:1231652
30507 chr9 112809828 112810197 wgEncodeRegTfbsClusteredV3 RUNX3 score:305, expCount:1, expNums:109, expScores:305, srow:4211588
30507 chr9 112810044 112810353 wgEncodeRegTfbsClusteredV3 POU2F2 score:314, expCount:1, expNums:125, expScores:314, srow:4211589
30507 chr9 112810053 112811472 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:39, expNums:22,61,62,104,105,123,124,130,131,147,163,206,207,259,275,283,306,307,326,328,330,332,334,336,338,340,362,366,461,465,563,564,577,585,596,599,602,619,637, expScores:133,963,478,363,507,382,451,326,281,489,925,602,983,897,765,205,374,160,410,1000,1000,318,824,1000,519,527,106,256,138,1000,323,239,1000,471,224,672,190,686,460, srow:4211590
30507 chr9 112810062 112810721 wgEncodeRegTfbsClusteredV3 MTA3 score:335, expCount:1, expNums:95, expScores:335, srow:4211591
30507 chr9 112810074 112810446 wgEncodeRegTfbsClusteredV3 TAF1 score:216, expCount:2, expNums:115,127, expScores:120,216, srow:4211592
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  • 25 of 48 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
30507 cellmeth_recounts PrEC: 1, LNCaP: 37, DU145: 15
30507 cellmeth_diffreps_PrECvsLNCaP A=1, B=21, Length=340, Event=Up, log2FC=4.39, padj=0.000108416961794953
30507 cellexp id=ENSG00000157654, name=PALM2-AKAP2, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0
30507 cellexp id=ENSG00000241978, name=AKAP2, PrEC=37, str=9, LNCaP=0, str=0, DU145=49, str=13
30507 tcgameth site:cg15083233, B=0.27, L=0.7, H=0.68
30507 tcgameth site:cg26288249, B=0.09, L=0.31, H=0.31
30507 tcgaexp gene=AKAP2, entrez=11217, pos=chr9:112810878-112934791(+), B=2313, L=1240, M=1343, H=1913
30507 tcgaexp gene=PALM2-AKAP2, entrez=445815, pos=chr9:112542577-112934791(+), B=2150, L=1511, M=1577, H=2237