DMR 32089 chr12:48577851-48578800 (950bp)
| DMR Stats | |
|---|---|
| Position | chr12:48577851-48578800 (View on UCSC) |
| Width | 950bp |
| Genomic Context | promoter |
| Nearest Genes | C12orf68 (0bp away) |
| ANODEV p-value | 7.4683764549e-10 |
| Frequencies | Benign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32089 | C12orf68 | 6343 | uc001rrj.2 | chr12 | 48577366 | 48579709 | + | 950 | 100.0 | 2.52 | 0 | 1.58 | E1 (100) | 9.58 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 32089 | chr12 | 48577967 | 48577967 | cosmic | COSM939800 | srow:277807 |
| 32089 | chr12 | 48577998 | 48577998 | cosmic | COSM40269 | srow:277808 |
| 32089 | chr12 | 48578079 | 48578079 | cosmic | COSM459492 | srow:277809 |
| 32089 | chr12 | 48578155 | 48578155 | cosmic | COSM1361862 | srow:277810 |
| 32089 | chr12 | 48578200 | 48578200 | cosmic | COSM431174 | srow:277811 |
| 32089 | chr12 | 48578270 | 48578270 | cosmic | COSM939801 | srow:277812 |
| 32089 | chr12 | 48578326 | 48578326 | cosmic | COSM939802 | srow:277813 |
| 32089 | chr12 | 48578373 | 48578373 | cosmic | COSM939803 | srow:277814 |
| 32089 | chr12 | 48578409 | 48578410 | cosmic | COSM301350 | srow:277815 |
| 32089 | chr12 | 48578436 | 48578436 | cosmic | COSM1606177 | srow:277816 |
| 32089 | chr12 | 48577362 | 48578574 | cpgIsland | CpG: 112 | length:1213, cpgNum:112, gcNum:822, perCpg:18.5, perGc:67.8, obsExp:0.8, srow:5269 |
| 32089 | chr12 | 48578575 | 48580574 | cpgShore | — | values(x.gr)[overs$srow, ]:9697 |
| 32089 | chr12 | 48577853 | 48577867 | phastConsElements100way | lod=33 | score:340, srow:1958137 |
| 32089 | chr12 | 48577877 | 48577884 | phastConsElements100way | lod=21 | score:295, srow:1958138 |
| 32089 | chr12 | 48577891 | 48577900 | phastConsElements100way | lod=26 | score:316, srow:1958139 |
| 32089 | chr12 | 48577904 | 48577949 | phastConsElements100way | lod=246 | score:538, srow:1958140 |
| 32089 | chr12 | 48577952 | 48578030 | phastConsElements100way | lod=364 | score:577, srow:1958141 |
| 32089 | chr12 | 48578032 | 48578180 | phastConsElements100way | lod=789 | score:654, srow:1958142 |
| 32089 | chr12 | 48578182 | 48578236 | phastConsElements100way | lod=186 | score:511, srow:1958143 |
| 32089 | chr12 | 48578281 | 48578286 | phastConsElements100way | lod=22 | score:300, srow:1958144 |
| 32089 | chr12 | 48578298 | 48578306 | phastConsElements100way | lod=13 | score:247, srow:1958145 |
| 32089 | chr12 | 48578311 | 48578321 | phastConsElements100way | lod=35 | score:345, srow:1958146 |
| 32089 | chr12 | 48578326 | 48578327 | phastConsElements100way | lod=14 | score:255, srow:1958147 |
| 32089 | chr12 | 48578332 | 48578348 | phastConsElements100way | lod=37 | score:351, srow:1958148 |
| 32089 | chr12 | 48578353 | 48578369 | phastConsElements100way | lod=48 | score:377, srow:1958149 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 32089 | cellmeth_recounts | PrEC: 5, LNCaP: 67, DU145: 41 |  |
| 32089 | cellmeth_diffreps_PrECvsLNCaP | A=4, B=39, Length=380, Event=Up, log2FC=3.29, padj=6.0485972066321e-07 |  |
| 32089 | cellmeth_diffreps_PrECvsDU145 | A=0, B=11, Length=200, Event=Up, log2FC=Inf, padj=0.00313959514768542 |  |
| 32089 | cellexp | id=ENSG00000177875, name=C12orf68, PrEC=9, str=18, LNCaP=4, str=4, DU145=58, str=20 |  |
| 32089 | tcgameth | site:cg07454491, B=0.1, L=0.25, H=0.22 |  |
| 32089 | tcgameth | site:cg10216353, B=0.08, L=0.24, H=0.17 |  |
| 32089 | tcgameth | site:cg14793287, B=0.4, L=0.6, H=0.59 |  |
| 32089 | tcgameth | site:cg15959252, B=0.57, L=0.82, H=0.78 |  |
| 32089 | tcgameth | site:cg20954987, B=0.22, L=0.44, H=0.43 |  |
| 32089 | tcgaexp | gene=ZNF26, entrez=7574, pos=chr12:93510-133589154(+), B=419, L=392, M=412, H=512 |  |
| 32089 | tcgaexp | gene=ZNF84, entrez=7637, pos=chr12:42780-133639885(+), B=1626, L=1649, M=1716, H=2045 |  |
| 32089 | tcgaexp | gene=C12orf68, entrez=387856, pos=chr12:48577366-48579709(+), B=83, L=63, M=80, H=68 |  |