DMR 33392 chr15:90039351-90039950 (600bp)
| DMR Stats | |
|---|---|
| Position | chr15:90039351-90039950 (View on UCSC) |
| Width | 600bp |
| Genomic Context | promoter |
| Nearest Genes | RHCG (0bp away) |
| ANODEV p-value | 4.89087018982e-09 |
| Frequencies | Benign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33392 | RHCG | 10253 | uc002bnz.2 | chr15 | 90014638 | 90039799 | - | 449 | 74.83 | 1.9 | 0 | 100.0 | E1 (34.67), I1 (40.17), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0) | 0.0 |
| 33392 | RHCG | 10253 | uc002boa.2 | chr15 | 90014638 | 90039799 | - | 449 | 74.83 | 1.42 | 1 | 100.0 | E1 (34.67), I1 (40.17), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0) | 0.0 |
| 33392 | RHCG | 10253 | uc010bnq.1 | chr15 | 90020959 | 90039799 | - | 449 | 74.83 | 1.84 | 0 | 100.0 | E1 (34.67), I1 (40.17), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) | 0.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 33392 | chr15 | 90039635 | 90039635 | cosmic | COSM966324 | srow:415008 |
| 33392 | chr15 | 90039668 | 90039668 | cosmic | COSM121744 | srow:415009 |
| 33392 | chr15 | 90039673 | 90039673 | cosmic | COSM1264148 | srow:415010 |
| 33392 | chr15 | 90039676 | 90039676 | cosmic | COSM1375340 | srow:415011 |
| 33392 | chr15 | 90039688 | 90039688 | cosmic | COSM1375341 | srow:415012 |
| 33392 | chr15 | 90039774 | 90039774 | cosmic | COSM1608805 | srow:415013 |
| 33392 | chr15 | 90039465 | 90039984 | cpgIsland | CpG: 50 | length:520, cpgNum:50, gcNum:359, perCpg:19.2, perGc:69, obsExp:0.81, srow:8256 |
| 33392 | chr15 | 90037465 | 90039464 | cpgShore | — | values(x.gr)[overs$srow, ]:15193 |
| 33392 | chr15 | 90039586 | 90039592 | phastConsElements100way | lod=97 | score:446, srow:3166097 |
| 33392 | chr15 | 90039594 | 90039613 | phastConsElements100way | lod=218 | score:526, srow:3166098 |
| 33392 | chr15 | 90039615 | 90039619 | phastConsElements100way | lod=54 | score:388, srow:3166099 |
| 33392 | chr15 | 90039623 | 90039628 | phastConsElements100way | lod=45 | score:370, srow:3166100 |
| 33392 | chr15 | 90039632 | 90039634 | phastConsElements100way | lod=40 | score:359, srow:3166101 |
| 33392 | chr15 | 90039656 | 90039661 | phastConsElements100way | lod=72 | score:417, srow:3166102 |
| 33392 | chr15 | 90039663 | 90039663 | phastConsElements100way | lod=12 | score:240, srow:3166103 |
| 33392 | chr15 | 90039666 | 90039667 | phastConsElements100way | lod=25 | score:312, srow:3166104 |
| 33392 | chr15 | 90039669 | 90039669 | phastConsElements100way | lod=22 | score:300, srow:3166105 |
| 33392 | chr15 | 90039672 | 90039673 | phastConsElements100way | lod=27 | score:320, srow:3166106 |
| 33392 | chr15 | 90039681 | 90039688 | phastConsElements100way | lod=73 | score:418, srow:3166107 |
| 33392 | chr15 | 90039690 | 90039691 | phastConsElements100way | lod=27 | score:320, srow:3166108 |
| 33392 | chr15 | 90039693 | 90039693 | phastConsElements100way | lod=15 | score:262, srow:3166109 |
| 33392 | chr15 | 90039696 | 90039714 | phastConsElements100way | lod=146 | score:487, srow:3166110 |
| 33392 | chr15 | 90039718 | 90039733 | phastConsElements100way | lod=110 | score:459, srow:3166111 |
| 33392 | chr15 | 90039741 | 90039751 | phastConsElements100way | lod=92 | score:441, srow:3166112 |
| 33392 | chr15 | 90039753 | 90039754 | phastConsElements100way | lod=31 | score:333, srow:3166113 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 33392 | cellmeth_recounts | PrEC: 5, LNCaP: 98, DU145: 1 |  |
| 33392 | cellmeth_diffreps_PrECvsLNCaP | A=7, B=76, Length=640, Event=Up, log2FC=3.44, padj=2.67853354721823e-14 |  |
| 33392 | cellmeth_diffreps_LNCaPvsDU145 | A=83.39, B=0.94, Length=680, Event=Down, log2FC=-6.48, padj=0 |  |
| 33392 | cellexp | id=ENSG00000140519, name=RHCG, PrEC=2684, str=4951, LNCaP=2, str=5, DU145=65, str=79 |  |
| 33392 | tcgameth | site:cg02805106, B=0.25, L=0.48, H=0.46 |  |
| 33392 | tcgameth | site:cg10453365, B=0.33, L=0.62, H=0.6 |  |
| 33392 | tcgameth | site:cg12042113, B=0.23, L=0.56, H=0.54 |  |
| 33392 | tcgameth | site:cg18726691, B=0.23, L=0.67, H=0.63 |  |
| 33392 | tcgameth | site:cg24653181, B=0.26, L=0.57, H=0.56 |  |
| 33392 | tcgaexp | gene=RHCG, entrez=51458, pos=chr15:90014638-90039799(-), B=271, L=58, M=75, H=40 |  |