DMR 34060 chr17:17626301-17628750 (2450bp)

DMR Stats
Positionchr17:17626301-17628750 (View on UCSC)
Width2450bp
Genomic Contextexon
Nearest GenesRAI1 (0bp away)
ANODEV p-value7.14529637478e-09
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
34060 RAI1 12265 uc002grm.3 chr17 17584787 17714765 + 2450 100.0 0.12 0 0.0 E1 (0), I1 (42.49), E2 (5.39), I2 (52.16), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
34060 chr17 17625606 17628500 cpgIsland CpG: 230 length:2895, cpgNum:230, gcNum:1766, perCpg:15.9, perGc:61, obsExp:0.86, srow:10236
34060 chr17 17628501 17630500 cpgShore — values(x.gr)[overs$srow, ]:18679
34060 chr17 17626301 17626309 phastConsElements100way lod=22 score:300, srow:3599146
34060 chr17 17626372 17626379 phastConsElements100way lod=19 score:285, srow:3599147
34060 chr17 17626478 17626489 phastConsElements100way lod=26 score:316, srow:3599148
34060 chr17 17626527 17626554 phastConsElements100way lod=52 score:385, srow:3599149
34060 chr17 17626575 17626611 phastConsElements100way lod=55 score:390, srow:3599150
34060 chr17 17626620 17626643 phastConsElements100way lod=43 score:366, srow:3599151
34060 chr17 17626650 17626652 phastConsElements100way lod=13 score:247, srow:3599152
34060 chr17 17626669 17626701 phastConsElements100way lod=59 score:397, srow:3599153
34060 chr17 17626716 17626726 phastConsElements100way lod=21 score:295, srow:3599154
34060 chr17 17626748 17626753 phastConsElements100way lod=23 score:304, srow:3599155
34060 chr17 17626760 17626800 phastConsElements100way lod=79 score:426, srow:3599156
34060 chr17 17626928 17626934 phastConsElements100way lod=16 score:268, srow:3599157
34060 chr17 17626946 17626954 phastConsElements100way lod=18 score:280, srow:3599158
34060 chr17 17627023 17627274 phastConsElements100way lod=993 score:677, srow:3599159
34060 chr17 17627289 17627394 phastConsElements100way lod=401 score:587, srow:3599160
34060 chr17 17627403 17627436 phastConsElements100way lod=68 score:411, srow:3599161
34060 chr17 17627443 17627483 phastConsElements100way lod=130 score:475, srow:3599162
34060 chr17 17627490 17627498 phastConsElements100way lod=53 score:387, srow:3599163
34060 chr17 17627505 17627509 phastConsElements100way lod=13 score:247, srow:3599164
34060 chr17 17627534 17627540 phastConsElements100way lod=13 score:247, srow:3599165
34060 chr17 17627613 17627618 phastConsElements100way lod=17 score:274, srow:3599166
34060 chr17 17627630 17627658 phastConsElements100way lod=58 score:395, srow:3599167
34060 chr17 17627663 17627670 phastConsElements100way lod=28 score:323, srow:3599168
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  • 25 of 137 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
34060 cellmeth_recounts PrEC: 80, LNCaP: 4849, DU145: 61
34060 cellmeth_diffreps_PrECvsLNCaP A=583, B=5143, Length=3860, Event=Up, log2FC=3.14, padj=0
34060 cellmeth_diffreps_PrECvsDU145 A=550, B=23, Length=1340, Event=Down, log2FC=-4.58, padj=0
34060 cellmeth_diffreps_LNCaPvsDU145 A=5498.1, B=59.87, Length=3880, Event=Down, log2FC=-6.52, padj=0
34060 cellexp id=ENSG00000108557, name=RAI1, PrEC=8222, str=4496, LNCaP=5636, str=3754, DU145=1644, str=1097
34060 tcgameth site:cg00073010, B=0.15, L=0.59, H=0.54
34060 tcgameth site:cg13000649, B=0.12, L=0.54, H=0.48
34060 tcgameth site:cg19447962, B=0.35, L=0.78, H=0.71
34060 tcgaexp gene=CRHR1, entrez=1394, pos=chr17:954315-43913194(+), B=36, L=21, M=25, H=18
34060 tcgaexp gene=MAPT, entrez=4137, pos=chr17:762281-44105699(+), B=1933, L=2382, M=2487, H=2583
34060 tcgaexp gene=NSF, entrez=4905, pos=chr17:266212-44834828(+), B=3355, L=5678, M=5410, H=5700
34060 tcgaexp gene=PLEKHM1, entrez=9842, pos=chr17:128328-43568146(-), B=1993, L=1631, M=1589, H=1418
34060 tcgaexp gene=LRRC37A, entrez=9884, pos=chr17:415627-44415160(+), B=924, L=896, M=971, H=940
34060 tcgaexp gene=RAI1, entrez=10743, pos=chr17:17584787-17714765(+), B=3085, L=2862, M=2789, H=2953
34060 tcgaexp gene=ARL17A, entrez=51326, pos=chr17:195721-44657088(-), B=200, L=195, M=210, H=230
34060 tcgaexp gene=LRRC37A4P, entrez=55073, pos=chr17:197706-43597889(-), B=1015, L=1512, M=1396, H=1450
34060 tcgaexp gene=CRHR1-IT1, entrez=147081, pos=chr17:1143726-43723595(+), B=197, L=211, M=215, H=223
34060 tcgaexp gene=SPPL2C, entrez=162540, pos=chr17:943102-43924438(+), B=0, L=0, M=0, H=0
34060 tcgaexp gene=ARHGAP27, entrez=201176, pos=chr17:86404-43511112(-), B=1570, L=1264, M=1273, H=1486
34060 tcgaexp gene=STH, entrez=246744, pos=chr17:790689-44077060(+), B=0, L=0, M=0, H=0
34060 tcgaexp gene=KANSL1, entrez=284058, pos=chr17:563498-44302740(-), B=3141, L=2594, M=2797, H=3017
34060 tcgaexp gene=MGC57346, entrez=401884, pos=chr17:1151952-43715329(+), B=601, L=581, M=566, H=598
34060 tcgaexp gene=LRRC37A2, entrez=474170, pos=chr17:197706-44633014(+), B=351, L=310, M=361, H=377
34060 tcgaexp gene=LOC644172, entrez=644172, pos=chr17:1188439-43679748(-), B=84, L=82, M=93, H=90
34060 tcgaexp gene=MAPT-AS1, entrez=100128977, pos=chr17:894694-43972879(-), B=1, L=2, M=4, H=2
34060 tcgaexp gene=MAPT-IT1, entrez=100130148, pos=chr17:891434-43976164(+), B=5, L=3, M=3, H=4