DMR 35033 chr19:17403001-17403500 (500bp)

DMR Stats
Positionchr19:17403001-17403500 (View on UCSC)
Width500bp
Genomic Context3' end
Nearest GenesABHD8 (0bp away)
ANODEV p-value0.0111119314747
FrequenciesBenign: 1.0 (14.29%), Low: 5.0 (83.33%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
35033 ABHD8 14693 uc002ngb.4 chr19 17402940 17414282 - 500 100.0 0.12 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (100) 100.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
35033 chr19 17403040 17403570 cpgIsland CpG: 47 length:531, cpgNum:47, gcNum:373, perCpg:17.7, perGc:70.2, obsExp:0.73, srow:13203
35033 chr19 17401040 17403039 cpgShore — values(x.gr)[overs$srow, ]:23823
35033 chr19 17403021 17403023 phastConsElements100way lod=12 score:240, srow:4207094
35033 chr19 17403031 17403039 phastConsElements100way lod=19 score:285, srow:4207095
35033 chr19 17403124 17403151 phastConsElements100way lod=64 score:405, srow:4207096
35033 chr19 17403202 17403213 phastConsElements100way lod=37 score:351, srow:4207097
35033 chr19 17403333 17403335 phastConsElements100way lod=21 score:295, srow:4207098
35033 chr19 17403472 17403481 phastConsElements100way lod=41 score:361, srow:4207099
35033 chr19 17403495 17403496 phastConsElements100way lod=21 score:295, srow:4207100
35033 chr19 17403499 17403502 phastConsElements100way lod=14 score:255, srow:4207101
35033 chr19 17403351 17403363 tfbsConsSites V$SP1_Q6 score:944, zScore:2.29, srow:2442940
35033 chr19 17402721 17403175 wgEncodeRegDnaseClusteredV2 17 score:449, srow:569053
35033 chr19 17403186 17403470 wgEncodeRegDnaseClusteredV2 84 score:1000, srow:569054
35033 chr19 17402710 17403078 wgEncodeRegTfbsClusteredV3 RCOR1 score:262, expCount:2, expNums:491,492, expScores:230,262, srow:1979450
35033 chr19 17402719 17403012 wgEncodeRegTfbsClusteredV3 ZNF143 score:247, expCount:2, expNums:361,552, expScores:164,247, srow:1979451
35033 chr19 17402736 17403085 wgEncodeRegTfbsClusteredV3 HDAC2 score:152, expCount:1, expNums:27, expScores:152, srow:1979452
35033 chr19 17402925 17403507 wgEncodeRegTfbsClusteredV3 ZBTB7A score:889, expCount:1, expNums:247, expScores:889, srow:1979453
35033 chr19 17402962 17403621 wgEncodeRegTfbsClusteredV3 SMARCB1 score:245, expCount:1, expNums:391, expScores:245, srow:1979454
35033 chr19 17402965 17403845 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:49, expNums:61,62,78,105,131,146,147,163,168,206,207,228,229,249,259,306,307,308,326,328,330,332,334,336,338,340,362,366,402,403,520,521,522,523,525,563,564,577,583,585,596,599,602,610,613,619,622,633,637, expScores:1000,1000,431,372,452,600,1000,784,1000,187,348,230,1000,148,259,454,185,220,376,268,491,341,341,755,291,417,229,308,356,314,315,221,381,561,539,462,253,865,461,213,451,173,221,180,432,225,332,322,256, srow:1979455
35033 chr19 17403074 17403683 wgEncodeRegTfbsClusteredV3 SP4 score:247, expCount:1, expNums:155, expScores:247, srow:1979456
35033 chr19 17403092 17403587 wgEncodeRegTfbsClusteredV3 HMGN3 score:224, expCount:1, expNums:501, expScores:224, srow:1979457
35033 chr19 17403097 17403406 wgEncodeRegTfbsClusteredV3 GABPA score:125, expCount:1, expNums:220, expScores:125, srow:1979458
35033 chr19 17403141 17403916 wgEncodeRegTfbsClusteredV3 KDM5B score:323, expCount:1, expNums:31, expScores:202, srow:1979459
35033 chr19 17403141 17403596 wgEncodeRegTfbsClusteredV3 CCNT2 score:177, expCount:1, expNums:476, expScores:177, srow:1979460
35033 chr19 17403180 17403331 wgEncodeRegTfbsClusteredV3 ELF1 score:294, expCount:2, expNums:88,217, expScores:189,294, srow:1979461
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  • 25 of 52 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
35033 cellmeth_recounts PrEC: 127, LNCaP: 48, DU145: 12
35033 cellmeth_diffreps_PrECvsLNCaP A=223, B=43, Length=940, Event=Down, log2FC=-2.37, padj=0
35033 cellmeth_diffreps_PrECvsDU145 A=223, B=14, Length=1000, Event=Down, log2FC=-3.99, padj=0
35033 cellmeth_diffreps_LNCaPvsDU145 A=23.52, B=3.74, Length=200, Event=Down, log2FC=-2.65, padj=0.00630962522793068
35033 cellexp id=ENSG00000127220, name=ABHD8, PrEC=711, str=407, LNCaP=1584, str=902, DU145=1534, str=752
35033 cellexp id=ENSG00000130312, name=MRPL34, PrEC=2286, str=1036, LNCaP=3153, str=2855, DU145=1352, str=1180
35033 tcgameth site:cg12247222, B=0.45, L=0.53, H=0.54
35033 tcgameth site:cg18888655, B=0.55, L=0.58, H=0.61
35033 tcgaexp gene=ABHD8, entrez=79575, pos=chr19:17402940-17414282(-), B=1000, L=927, M=824, H=711