DMR 36507 chr1:1397851-1398100 (250bp)

DMR Stats
Positionchr1:1397851-1398100 (View on UCSC)
Width250bp
Genomic Contextexon
Nearest GenesATAD3C (0bp away)
ANODEV p-value0.000190528774031
FrequenciesBenign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 4.0 (44.44 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
36507 ATAD3C 70 uc001aft.2 chr1 1385069 1405538 + 250 100.0 0.05 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (51.6), E11 (43.6), I11 (5.2), E12 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
36507 chr1 1398007 1398007 cosmic COSM1333442 srow:871
36507 chr1 1398008 1398008 cosmic COSM894998 srow:872
36507 chr1 1396339 1398338 cpgShore — values(x.gr)[overs$srow, ]:152
36507 chr1 1397977 1397982 phastConsElements100way lod=78 score:425, srow:6586
36507 chr1 1397985 1398006 phastConsElements100way lod=301 score:558, srow:6587
36507 chr1 1398008 1398021 phastConsElements100way lod=143 score:485, srow:6588
36507 chr1 1398023 1398027 phastConsElements100way lod=60 score:399, srow:6589
36507 chr1 1398029 1398030 phastConsElements100way lod=36 score:348, srow:6590
36507 chr1 1398032 1398039 phastConsElements100way lod=59 score:397, srow:6591
36507 chr1 1398041 1398051 phastConsElements100way lod=154 score:492, srow:6592
36507 chr1 1398053 1398057 phastConsElements100way lod=62 score:402, srow:6593
36507 chr1 1398059 1398066 phastConsElements100way lod=105 score:454, srow:6594
36507 chr1 1398068 1398072 phastConsElements100way lod=64 score:405, srow:6595
36507 chr1 1398074 1398075 phastConsElements100way lod=35 score:345, srow:6596
36507 chr1 1398077 1398081 phastConsElements100way lod=75 score:421, srow:6597
36507 chr1 1398083 1398093 phastConsElements100way lod=169 score:501, srow:6598
36507 chr1 1397978 1398000 tfbsConsSites V$PPARG_02 score:695, zScore:1.91, srow:1653
36507 chr1 1397990 1398002 tfbsConsSites V$RORA2_01 score:849, zScore:1.83, srow:1654
36507 chr1 1398044 1398057 tfbsConsSites V$OCT1_06 score:891, zScore:2.26, srow:1655
36507 chr1 1397606 1398330 wgEncodeRegDnaseClusteredV2 59 score:1000, srow:683
36507 chr1 1397675 1398364 wgEncodeRegTfbsClusteredV3 POLR2A score:335, expCount:5, expNums:130,192,306,328,445, expScores:282,270,335,319,83, srow:3932
36507 chr1 1397681 1397924 wgEncodeRegTfbsClusteredV3 EGR1 score:192, expCount:1, expNums:216, expScores:192, srow:3933
36507 chr1 1397704 1398139 wgEncodeRegTfbsClusteredV3 MXI1 score:247, expCount:2, expNums:298,441, expScores:223,247, srow:3934
36507 chr1 1397715 1397952 wgEncodeRegTfbsClusteredV3 CEBPB score:180, expCount:2, expNums:425,426, expScores:170,180, srow:3935
36507 chr1 1397716 1397991 wgEncodeRegTfbsClusteredV3 ELF1 score:187, expCount:1, expNums:175, expScores:187, srow:3936
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  • 25 of 34 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
36507 cellmeth_recounts PrEC: 0, LNCaP: 8, DU145: 5
36507 cellexp id=ENSG00000215915, name=ATAD3C, PrEC=99, str=36, LNCaP=39, str=33, DU145=28, str=20
36507 tcgameth site:cg24687970, B=0.34, L=0.64, H=0.62
36507 tcgameth site:cg25101405, B=0.31, L=0.62, H=0.58
36507 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
36507 tcgaexp gene=ATAD3C, entrez=219293, pos=chr1:1385069-1405538(+), B=392, L=189, M=171, H=134
36507 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305
36507 pubmed gene=ATAD3C, G=3, GP=0, GC=3, GM=0, GPM=0, GCM=0