DMR 37009 chr1:227173601-227174300 (700bp)
| DMR Stats | |
|---|---|
| Position | chr1:227173601-227174300 (View on UCSC) |
| Width | 700bp |
| Genomic Context | 3' end |
| Nearest Genes | ADCK3 (0bp away) |
| ANODEV p-value | 8.336350857e-06 |
| Frequencies | Benign: 0.0 (0.0%), Low: 2.0 (33.33%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37009 | ADCK3 | 2643 | uc001hqm.1 | chr1 | 227084589 | 227175246 | + | 700 | 100.0 | 0.09 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (79), E20 (21) | 7.71 |
| 37009 | ADCK3 | 2643 | uc001hqn.1 | chr1 | 227127938 | 227175246 | + | 700 | 100.0 | 0.09 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (79), E15 (21) | 7.71 |
| 37009 | ADCK3 | 2643 | uc001hqo.1 | chr1 | 227165105 | 227175246 | + | 700 | 100.0 | 0.09 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (79), E11 (21) | 7.71 |
| 37009 | ADCK3 | 2643 | uc009xeq.1 | chr1 | 227127938 | 227175246 | + | 700 | 100.0 | 0.09 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (79), E15 (21) | 7.71 |
| 37009 | ADCK3 | 2643 | uc009xer.1 | chr1 | 227170595 | 227175246 | + | 700 | 100.0 | 0.06 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (79), E7 (21) | 7.71 |
| 37009 | ADCK3 | 2643 | uc010pvq.1 | chr1 | 227127938 | 227175246 | + | 700 | 100.0 | 0.06 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (79), E12 (21) | 7.71 |
| 37009 | ADCK3 | 2643 | uc010pvr.1 | chr1 | 227153372 | 227175246 | + | 700 | 100.0 | 0.06 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (79), E11 (21) | 7.71 |
- 7 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 37009 | chr1 | 227174152 | 227174152 | cosmic | COSM464051 | srow:112973 |
| 37009 | chr1 | 227174152 | 227174152 | cosmic | COSM464052 | srow:112974 |
| 37009 | chr1 | 227174165 | 227174165 | cosmic | COSM1320435 | srow:112975 |
| 37009 | chr1 | 227174165 | 227174165 | cosmic | COSM1320436 | srow:112976 |
| 37009 | chr1 | 227174166 | 227174166 | cosmic | COSM904793 | srow:112977 |
| 37009 | chr1 | 227174166 | 227174166 | cosmic | COSM904794 | srow:112978 |
| 37009 | chr1 | 227174193 | 227174193 | cosmic | COSM414598 | srow:112979 |
| 37009 | chr1 | 227174193 | 227174193 | cosmic | COSM414599 | srow:112980 |
| 37009 | chr1 | 227174247 | 227174247 | cosmic | COSM904796 | srow:112981 |
| 37009 | chr1 | 227174270 | 227174270 | cosmic | COSM1473466 | srow:112982 |
| 37009 | chr1 | 227174270 | 227174270 | cosmic | COSM1473467 | srow:112983 |
| 37009 | chr1 | 227174152 | 227174164 | phastConsElements100way | lod=146 | score:487, srow:807256 |
| 37009 | chr1 | 227174166 | 227174176 | phastConsElements100way | lod=121 | score:468, srow:807257 |
| 37009 | chr1 | 227174178 | 227174194 | phastConsElements100way | lod=236 | score:534, srow:807258 |
| 37009 | chr1 | 227174196 | 227174200 | phastConsElements100way | lod=94 | score:443, srow:807259 |
| 37009 | chr1 | 227174202 | 227174203 | phastConsElements100way | lod=36 | score:348, srow:807260 |
| 37009 | chr1 | 227174205 | 227174209 | phastConsElements100way | lod=32 | score:337, srow:807261 |
| 37009 | chr1 | 227174214 | 227174218 | phastConsElements100way | lod=32 | score:337, srow:807262 |
| 37009 | chr1 | 227174220 | 227174227 | phastConsElements100way | lod=92 | score:441, srow:807263 |
| 37009 | chr1 | 227174229 | 227174230 | phastConsElements100way | lod=44 | score:368, srow:807264 |
| 37009 | chr1 | 227174235 | 227174245 | phastConsElements100way | lod=121 | score:468, srow:807265 |
| 37009 | chr1 | 227174247 | 227174266 | phastConsElements100way | lod=209 | score:522, srow:807266 |
| 37009 | chr1 | 227174268 | 227174269 | phastConsElements100way | lod=30 | score:330, srow:807267 |
| 37009 | chr1 | 227174272 | 227174290 | phastConsElements100way | lod=212 | score:524, srow:807268 |
| 37009 | chr1 | 227174293 | 227174296 | phastConsElements100way | lod=37 | score:351, srow:807269 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 37009 | cellmeth_recounts | PrEC: 43, LNCaP: 10, DU145: 3 |  |
| 37009 | cellmeth_diffreps_PrECvsLNCaP | A=40, B=5, Length=380, Event=Down, log2FC=-3, padj=1.62084981826649e-06 |  |
| 37009 | cellmeth_diffreps_PrECvsLNCaP | A=36, B=1, Length=460, Event=Down, log2FC=-5.17, padj=6.94455790086297e-09 |  |
| 37009 | cellmeth_diffreps_PrECvsDU145 | A=40, B=2, Length=400, Event=Down, log2FC=-4.32, padj=9.27312367715555e-09 |  |
| 37009 | cellmeth_diffreps_PrECvsDU145 | A=31, B=1, Length=400, Event=Down, log2FC=-4.95, padj=2.42525854690887e-07 |  |
| 37009 | cellexp | id=ENSG00000163050, name=ADCK3, PrEC=389, str=304, LNCaP=8696, str=8679, DU145=830, str=653 |  |
| 37009 | tcgaexp | gene=ADCK3, entrez=56997, pos=chr1:227084589-227175246(+), B=4622, L=6253, M=5729, H=5109 |  |
| 37009 | pubmed | gene=ADCK3, G=17, GP=0, GC=0, GM=0, GPM=0, GCM=0 |  |