DMR 37019 chr1:229567951-229568300 (350bp)

DMR Stats
Positionchr1:229567951-229568300 (View on UCSC)
Width350bp
Genomic Context3' end
Nearest GenesACTA1 (0bp away)
ANODEV p-value0.00110964412195
FrequenciesBenign: 0.0 (0.0%), Low: 1.0 (16.67%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
37019 ACTA1 2686 uc001htm.3 chr1 229566993 229569843 - 350 100.0 0.11 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (35.14), E4 (46.29), I4 (18.86), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) 12.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
37019 chr1 229568041 229568041 cosmic COSM905240 srow:116199
37019 chr1 229568069 229568069 cosmic COSM905241 srow:116200
37019 chr1 229568092 229568092 cosmic COSM414578 srow:116201
37019 chr1 229568141 229568141 cosmic COSM905242 srow:116202
37019 chr1 229568145 229568145 cosmic COSM533316 srow:116203
37019 chr1 229568165 229568165 cosmic COSM1601863 srow:116204
37019 chr1 229568170 229568170 cosmic COSM1501225 srow:116205
37019 chr1 229567207 229570684 cpgIsland CpG: 245 length:3478, cpgNum:245, gcNum:2129, perCpg:14.1, perGc:61.2, obsExp:0.75, srow:2326
37019 chr1 229568014 229568044 phastConsElements100way lod=383 score:582, srow:815210
37019 chr1 229568046 229568068 phastConsElements100way lod=345 score:572, srow:815211
37019 chr1 229568070 229568083 phastConsElements100way lod=171 score:502, srow:815212
37019 chr1 229568085 229568110 phastConsElements100way lod=361 score:576, srow:815213
37019 chr1 229568112 229568158 phastConsElements100way lod=588 score:625, srow:815214
37019 chr1 229568160 229568161 phastConsElements100way lod=29 score:327, srow:815215
37019 chr1 229568163 229568181 phastConsElements100way lod=221 score:528, srow:815216
37019 chr1 229568294 229568315 phastConsElements100way lod=237 score:535, srow:815217
37019 chr1 229568016 229568043 tfbsConsSites V$PAX5_01 score:761, zScore:1.66, srow:476889
37019 chr1 229568018 229568023 tfbsConsSites V$AML1_01 score:1000, zScore:1.78, srow:476890
37019 chr1 229568074 229568093 tfbsConsSites V$P53_01 score:694, zScore:2.04, srow:476891
37019 chr1 229568088 229568108 tfbsConsSites V$PAX4_01 score:850, zScore:2.61, srow:476892
37019 chr1 229568090 229568108 tfbsConsSites V$PAX2_01 score:775, zScore:1.8, srow:476893
37019 chr1 229568096 229568119 tfbsConsSites V$HTF_01 score:765, zScore:1.77, srow:476894
37019 chr1 229568100 229568116 tfbsConsSites V$XBP1_01 score:838, zScore:2.71, srow:476895
37019 chr1 229568105 229568122 tfbsConsSites V$CEBP_C score:858, zScore:2.8, srow:476896
37019 chr1 229568123 229568140 tfbsConsSites V$SRF_01 score:787, zScore:2.81, srow:476897
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  • 25 of 31 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
37019 cellmeth_recounts PrEC: 1, LNCaP: 47, DU145: 9
37019 cellmeth_diffreps_PrECvsLNCaP A=1, B=105, Length=1160, Event=Up, log2FC=6.71, padj=0
37019 cellmeth_diffreps_LNCaPvsDU145 A=38.49, B=5.61, Length=340, Event=Down, log2FC=-2.78, padj=3.63425783842731e-05
37019 cellexp id=ENSG00000143632, name=ACTA1, PrEC=2, str=2, LNCaP=8, str=8, DU145=3, str=3
37019 tcgameth site:cg00034468, B=0.31, L=0.37, H=0.46
37019 tcgameth site:cg04568492, B=0.03, L=0.14, H=0.15
37019 tcgaexp gene=ACTA1, entrez=58, pos=chr1:229566993-229569843(-), B=3186, L=1252, M=4671, H=2198