DMR 5791 chr11:406801-407050 (250bp)

DMR Stats
Positionchr11:406801-407050 (View on UCSC)
Width250bp
Genomic Context3' end
Nearest GenesSIGIRR (0bp away)
ANODEV p-value0.000862179967854
FrequenciesBenign: 1.0 (14.29%), Low: 4.0 (66.67%), High: 2.0 (22.22 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
5791 SIGIRR 4081 uc001lpd.2 chr11 405716 414999 - 250 100.0 0.03 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (23.2), E8 (60.4), I8 (16.8), E9 (0), I9 (0), E10 (0) 0.0
5791 SIGIRR 4081 uc001lpe.1 chr11 405716 417397 - 250 100.0 0.03 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (23.2), E8 (60.4), I8 (16.8), E9 (0), I9 (0), E10 (0) 0.0
5791 SIGIRR 4081 uc001lpf.2 chr11 405716 417397 - 250 100.0 0.04 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (23.2), E8 (60.4), I8 (16.8), E9 (0), I9 (0), E10 (0) 0.0
5791 SIGIRR 4081 uc001lpg.3 chr11 405872 410027 - 250 100.0 0.03 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (23.2), E7 (60.4), I7 (16.8), E8 (0) 28.4
  • 4 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
5791 chr11 406847 406847 cosmic COSM1720421 srow:179591
5791 chr11 406492 407871 cpgIsland CpG: 111 length:1380, cpgNum:111, gcNum:825, perCpg:16.1, perGc:59.8, obsExp:0.9, srow:3625
5791 chr11 406841 406845 phastConsElements100way lod=45 score:370, srow:1312501
5791 chr11 406847 406851 phastConsElements100way lod=47 score:375, srow:1312502
5791 chr11 406853 406868 phastConsElements100way lod=90 score:439, srow:1312503
5791 chr11 406871 406875 phastConsElements100way lod=31 score:333, srow:1312504
5791 chr11 406880 406899 phastConsElements100way lod=98 score:447, srow:1312505
5791 chr11 406904 406908 phastConsElements100way lod=26 score:316, srow:1312506
5791 chr11 406910 406914 phastConsElements100way lod=43 score:366, srow:1312507
5791 chr11 406919 406926 phastConsElements100way lod=23 score:304, srow:1312508
5791 chr11 406930 406983 phastConsElements100way lod=304 score:559, srow:1312509
5791 chr11 406985 406996 phastConsElements100way lod=81 score:429, srow:1312510
5791 chr11 407009 407014 phastConsElements100way lod=16 score:268, srow:1312511
5791 chr11 406863 406875 tfbsConsSites V$RORA1_01 score:870, zScore:1.74, srow:768078
5791 chr11 406933 406951 tfbsConsSites V$PAX2_01 score:770, zScore:1.69, srow:768079
5791 chr11 406766 406815 wgEncodeRegDnaseClusteredV2 2 score:954, srow:184814
5791 chr11 406821 407570 wgEncodeRegDnaseClusteredV2 122 score:1000, srow:184815
5791 chr11 406590 407324 wgEncodeRegTfbsClusteredV3 POLR2A score:935, expCount:16, expNums:61,62,105,229,249,328,336,338,362,366,402,403,522,523,525,596, expScores:935,753,558,453,189,240,175,249,106,139,401,374,228,207,209,220, srow:639419
5791 chr11 406635 407358 wgEncodeRegTfbsClusteredV3 RBBP5 score:231, expCount:1, expNums:33, expScores:231, srow:639420
5791 chr11 406668 407103 wgEncodeRegTfbsClusteredV3 CTCF score:767, expCount:41, expNums:0,2,5,24,49,137,213,290,493,595,597,601,603,604,605,606,607,609,612,621,630,635,636,638,639,642,648,650,651,652,654,655,656,661,671,676,678,679,685,686,687, expScores:317,154,115,188,175,216,442,390,308,496,294,202,332,767,413,318,371,122,327,419,156,427,105,153,168,147,193,204,286,200,209,201,170,137,109,128,127,174,211,225,147, srow:639421
5791 chr11 406675 407339 wgEncodeRegTfbsClusteredV3 CCNT2 score:147, expCount:1, expNums:476, expScores:109, srow:639422
5791 chr11 406713 407152 wgEncodeRegTfbsClusteredV3 CBX3 score:450, expCount:1, expNums:211, expScores:450, srow:639423
5791 chr11 406719 407063 wgEncodeRegTfbsClusteredV3 YY1 score:187, expCount:2, expNums:244,245, expScores:155,187, srow:639424
5791 chr11 406722 407121 wgEncodeRegTfbsClusteredV3 NR2F2 score:255, expCount:1, expNums:225, expScores:255, srow:639425
5791 chr11 406730 407202 wgEncodeRegTfbsClusteredV3 ZBTB7A score:697, expCount:1, expNums:247, expScores:697, srow:639426
  • Page 1 of 2
  • 25 of 47 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
5791 cellmeth_recounts PrEC: 23, LNCaP: 129, DU145: 15
5791 cellmeth_diffreps_PrECvsLNCaP A=101, B=202, Length=420, Event=Up, log2FC=1, padj=3.16763251163113e-07
5791 cellmeth_diffreps_PrECvsDU145 A=251, B=23, Length=700, Event=Down, log2FC=-3.45, padj=0
5791 cellmeth_diffreps_LNCaPvsDU145 A=558.04, B=31.8, Length=1380, Event=Down, log2FC=-4.13, padj=0
5791 cellexp id=ENSG00000185187, name=SIGIRR, PrEC=804, str=295, LNCaP=3298, str=1795, DU145=329, str=114
5791 tcgameth site:cg18351999, B=0.51, L=0.51, H=0.45
5791 tcgameth site:cg24440302, B=0.3, L=0.42, H=0.3
5791 tcgaexp gene=SIGIRR, entrez=59307, pos=chr11:405716-417397(-), B=2062, L=2547, M=2519, H=2148