DMR 71 chr1:6268801-6269000 (200bp)

DMR Stats
Positionchr1:6268801-6269000 (View on UCSC)
Width200bp
Genomic Contextpromoter
Nearest GenesRNF207 (0bp away)
ANODEV p-value0.013803254182
FrequenciesBenign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
71 RNF207 144 uc001amg.3 chr1 6266189 6281359 + 200 100.0 0.18 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (70), E4 (30), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0) 0.0
71 RNF207 144 uc001amh.3 chr1 6268678 6270960 + 200 100.0 0.3 0 100.0 E1 (100), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) 0.0
71 RNF207 144 uc010nzp.1 chr1 6268941 6278429 + 60 30.0 0.18 1 100.0 E1 (30), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
71 chr1 6268821 6269588 cpgIsland CpG: 88 length:768, cpgNum:88, gcNum:531, perCpg:22.9, perGc:69.1, obsExp:0.96, srow:319
71 chr1 6266779 6268820 cpgShore — values(x.gr)[overs$srow, ]:532
71 chr1 6268918 6268921 phastConsElements100way lod=12 score:240, srow:21593
71 chr1 6268938 6268942 phastConsElements100way lod=66 score:408, srow:21594
71 chr1 6268947 6268969 phastConsElements100way lod=201 score:518, srow:21595
71 chr1 6268971 6268981 phastConsElements100way lod=88 score:437, srow:21596
71 chr1 6268983 6268987 phastConsElements100way lod=45 score:370, srow:21597
71 chr1 6268995 6269002 phastConsElements100way lod=93 score:442, srow:21598
71 chr1 6268956 6268969 tfbsConsSites V$CEBP_Q2 score:900, zScore:2.09, srow:9719
71 chr1 6268962 6268979 tfbsConsSites V$AP4_01 score:820, zScore:1.8, srow:9720
71 chr1 6268974 6268983 tfbsConsSites V$NFKAPPAB_01 score:920, zScore:1.98, srow:9721
71 chr1 6268985 6268996 tfbsConsSites V$E2F_03 score:867, zScore:1.99, srow:9722
71 chr1 6268993 6269004 tfbsConsSites V$E2F_03 score:854, zScore:1.78, srow:9723
71 chr1 6268999 6269017 tfbsConsSites V$AHRARNT_02 score:787, zScore:1.98, srow:9724
71 chr1 6268646 6269255 wgEncodeRegDnaseClusteredV2 74 score:1000, srow:4803
71 chr1 6268631 6269054 wgEncodeRegTfbsClusteredV3 POLR2A score:241, expCount:1, expNums:522, expScores:241, srow:13174
71 chr1 6268634 6269129 wgEncodeRegTfbsClusteredV3 HMGN3 score:181, expCount:1, expNums:501, expScores:181, srow:13175
71 chr1 6268658 6269113 wgEncodeRegTfbsClusteredV3 CCNT2 score:162, expCount:1, expNums:476, expScores:162, srow:13176
71 chr1 6268673 6268982 wgEncodeRegTfbsClusteredV3 GABPA score:120, expCount:1, expNums:220, expScores:120, srow:13177
71 chr1 6268673 6269102 wgEncodeRegTfbsClusteredV3 MYC score:759, expCount:6, expNums:486,487,488,489,490,620, expScores:184,759,324,754,221,351, srow:13178
71 chr1 6268680 6269084 wgEncodeRegTfbsClusteredV3 CTCF score:1000, expCount:70, expNums:2,5,14,16,18,20,24,35,37,39,42,44,137,213,262,290,463,493,597,601,603,604,605,606,607,609,618,621,635,636,639,640,641,642,643,644,645,646,650,651,652,653,654,655,656,657,658,659,660,661,662,664,668,669,670,671,672,673,674,675,676,677,678,679,682,683,684,687,688,689, expScores:362,412,95,337,118,442,527,209,444,302,420,170,250,633,309,447,601,703,851,418,497,514,673,312,429,406,176,702,406,632,676,547,149,488,456,357,469,287,656,189,391,1000,476,575,487,636,454,325,185,700,498,194,236,303,130,517,220,377,527,209,425,904,426,652,619,611,210,1000,701,187, srow:13179
71 chr1 6268696 6269071 wgEncodeRegTfbsClusteredV3 TBP score:213, expCount:1, expNums:545, expScores:213, srow:13180
71 chr1 6268702 6269051 wgEncodeRegTfbsClusteredV3 HDAC2 score:181, expCount:3, expNums:27,141,222, expScores:181,152,132, srow:13181
71 chr1 6268702 6268980 wgEncodeRegTfbsClusteredV3 NRF1 score:177, expCount:2, expNums:303,518, expScores:177,123, srow:13182
71 chr1 6268709 6269143 wgEncodeRegTfbsClusteredV3 MAX score:1000, expCount:3, expNums:223,460,511, expScores:1000,321,590, srow:13183
  • Page 1 of 2
  • 25 of 40 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
71 cellmeth_recounts PrEC: 392, LNCaP: 277, DU145: 9
71 cellmeth_diffreps_PrECvsLNCaP A=1292, B=576, Length=1080, Event=Down, log2FC=-1.17, padj=0
71 cellmeth_diffreps_PrECvsDU145 A=1336, B=51, Length=1360, Event=Down, log2FC=-4.71, padj=0
71 cellmeth_diffreps_LNCaPvsDU145 A=635.01, B=37.42, Length=1180, Event=Down, log2FC=-4.09, padj=0
71 cellexp id=ENSG00000116251, name=RPL22, PrEC=7011, str=3775, LNCaP=9345, str=7785, DU145=3808, str=5248
71 cellexp id=ENSG00000158286, name=RNF207, PrEC=772, str=1489, LNCaP=542, str=266, DU145=993, str=933
71 tcgameth site:cg18235937, B=0.56, L=0.6, H=0.58
71 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
71 tcgaexp gene=RNF207, entrez=388591, pos=chr1:6266189-6281359(+), B=476, L=319, M=304, H=325
71 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305