DMR 9264 chr20:44803151-44803750 (600bp)
| DMR Stats | |
|---|---|
| Position | chr20:44803151-44803750 (View on UCSC) |
| Width | 600bp |
| Genomic Context | 3' end |
| Nearest Genes | CDH22 (0bp away) |
| ANODEV p-value | 2.06868578724e-05 |
| Frequencies | Benign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 3.0 (33.33 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 9264 | CDH22 | 18404 | uc010ghk.2 | chr20 | 44802372 | 44937137 | - | 600 | 100.0 | 0.19 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (5.83), E12 (94.33) | 36.83 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 9264 | chr20 | 44803271 | 44803271 | cosmic | COSM1247834 | srow:756575 |
| 9264 | chr20 | 44803444 | 44803444 | cosmic | COSM402210 | srow:756576 |
| 9264 | chr20 | 44803566 | 44803566 | cosmic | COSM289521 | srow:756577 |
| 9264 | chr20 | 44803585 | 44803585 | cosmic | COSM577995 | srow:756578 |
| 9264 | chr20 | 44803687 | 44803687 | cosmic | COSM1027433 | srow:756579 |
| 9264 | chr20 | 44803065 | 44803662 | cpgIsland | CpG: 68 | length:598, cpgNum:68, gcNum:380, perCpg:22.7, perGc:63.5, obsExp:1.14, srow:16720 |
| 9264 | chr20 | 44803663 | 44806599 | cpgShore | — | values(x.gr)[overs$srow, ]:30135 |
| 9264 | chr20 | 44803142 | 44803153 | phastConsElements100way | lod=79 | score:426, srow:5381694 |
| 9264 | chr20 | 44803161 | 44803168 | phastConsElements100way | lod=43 | score:366, srow:5381695 |
| 9264 | chr20 | 44803173 | 44803192 | phastConsElements100way | lod=114 | score:462, srow:5381696 |
| 9264 | chr20 | 44803194 | 44803210 | phastConsElements100way | lod=182 | score:509, srow:5381697 |
| 9264 | chr20 | 44803212 | 44803246 | phastConsElements100way | lod=339 | score:570, srow:5381698 |
| 9264 | chr20 | 44803248 | 44803250 | phastConsElements100way | lod=45 | score:370, srow:5381699 |
| 9264 | chr20 | 44803254 | 44803283 | phastConsElements100way | lod=213 | score:524, srow:5381700 |
| 9264 | chr20 | 44803287 | 44803288 | phastConsElements100way | lod=26 | score:316, srow:5381701 |
| 9264 | chr20 | 44803290 | 44803291 | phastConsElements100way | lod=21 | score:295, srow:5381702 |
| 9264 | chr20 | 44803293 | 44803315 | phastConsElements100way | lod=224 | score:529, srow:5381703 |
| 9264 | chr20 | 44803317 | 44803336 | phastConsElements100way | lod=255 | score:542, srow:5381704 |
| 9264 | chr20 | 44803338 | 44803342 | phastConsElements100way | lod=67 | score:410, srow:5381705 |
| 9264 | chr20 | 44803344 | 44803395 | phastConsElements100way | lod=380 | score:581, srow:5381706 |
| 9264 | chr20 | 44803398 | 44803411 | phastConsElements100way | lod=116 | score:464, srow:5381707 |
| 9264 | chr20 | 44803413 | 44803423 | phastConsElements100way | lod=45 | score:370, srow:5381708 |
| 9264 | chr20 | 44803427 | 44803447 | phastConsElements100way | lod=77 | score:423, srow:5381709 |
| 9264 | chr20 | 44803449 | 44803457 | phastConsElements100way | lod=15 | score:262, srow:5381710 |
| 9264 | chr20 | 44803461 | 44803472 | phastConsElements100way | lod=32 | score:337, srow:5381711 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 9264 | cellmeth_recounts | PrEC: 88, LNCaP: 321, DU145: 10 |  |
| 9264 | cellmeth_diffreps_PrECvsLNCaP | A=110, B=232, Length=580, Event=Up, log2FC=1.08, padj=2.14396607284609e-09 |  |
| 9264 | cellmeth_diffreps_PrECvsDU145 | A=137, B=9, Length=820, Event=Down, log2FC=-3.93, padj=0 |  |
| 9264 | cellmeth_diffreps_LNCaPvsDU145 | A=274.74, B=9.35, Length=860, Event=Down, log2FC=-4.88, padj=0 |  |
| 9264 | cellexp | id=ENSG00000149654, name=CDH22, PrEC=0, str=0, LNCaP=1, str=1, DU145=4, str=2 |  |
| 9264 | tcgameth | site:cg12347346, B=0.33, L=0.41, H=0.35 |  |
| 9264 | tcgameth | site:cg13390630, B=0.3, L=0.41, H=0.26 |  |
| 9264 | tcgameth | site:cg17412248, B=0.23, L=0.26, H=0.21 |  |
| 9264 | tcgameth | site:cg17964981, B=0.33, L=0.39, H=0.3 |  |
| 9264 | tcgaexp | gene=CDH22, entrez=64405, pos=chr20:44802372-44937137(-), B=213, L=132, M=107, H=98 |  |