DMR 36506 chr1:1372701-1372850 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:1372701-1372850 (View on UCSC) |
| Width | 150bp |
| Genomic Context | exon |
| Nearest Genes | VWA1 (0bp away) |
| ANODEV p-value | 0.018844004522 |
| Frequencies | Benign: 0.0 (0.0%), Low: 1.0 (16.67%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36506 | VWA1 | 69 | uc001afr.3 | chr1 | 1370903 | 1378262 | + | 150 | 100.0 | 0.02 | 0 | 0.0 | E1 (0), I1 (0.67), E2 (99.33), I2 (0), E3 (0) | 0.0 |
| 36506 | VWA1 | 69 | uc001afs.3 | chr1 | 1370903 | 1378262 | + | 150 | 100.0 | 0.02 | 0 | 0.0 | E1 (0), I1 (0), E2 (100), I2 (0), E3 (0) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 36506 | chr1 | 1372725 | 1372748 | tfbsConsSites | V$COMP1_01 | score:796, zScore:1.91, srow:1591 |
| 36506 | chr1 | 1372740 | 1372757 | tfbsConsSites | V$RFX1_02 | score:848, zScore:2.26, srow:1592 |
| 36506 | chr1 | 1372765 | 1372782 | tfbsConsSites | V$AP4_01 | score:823, zScore:1.85, srow:1593 |
| 36506 | chr1 | 1372421 | 1373275 | wgEncodeRegDnaseClusteredV2 | 20 | score:686, srow:670 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 36506 | cellmeth_recounts | PrEC: 15, LNCaP: 183, DU145: 1 |  |
| 36506 | cellmeth_diffreps_PrECvsLNCaP | A=68, B=433, Length=1120, Event=Up, log2FC=2.67, padj=0 |  |
| 36506 | cellmeth_diffreps_PrECvsDU145 | A=67, B=7, Length=620, Event=Down, log2FC=-3.26, padj=8.97894501171479e-12 |  |
| 36506 | cellmeth_diffreps_LNCaPvsDU145 | A=457.55, B=14.97, Length=1040, Event=Down, log2FC=-4.93, padj=0 |  |
| 36506 | cellexp | id=ENSG00000179403, name=VWA1, PrEC=3375, str=1848, LNCaP=6035, str=4905, DU145=1828, str=1228 |  |
| 36506 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 36506 | tcgaexp | gene=VWA1, entrez=64856, pos=chr1:1370903-1378262(+), B=16879, L=17310, M=14366, H=11700 |  |
| 36506 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |