DMR 36507 chr1:1397851-1398100 (250bp)
| DMR Stats | |
|---|---|
| Position | chr1:1397851-1398100 (View on UCSC) |
| Width | 250bp |
| Genomic Context | exon |
| Nearest Genes | ATAD3C (0bp away) |
| ANODEV p-value | 0.000190528774031 |
| Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 4.0 (44.44 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36507 | ATAD3C | 70 | uc001aft.2 | chr1 | 1385069 | 1405538 | + | 250 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (51.6), E11 (43.6), I11 (5.2), E12 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 36507 | chr1 | 1397742 | 1398057 | wgEncodeRegTfbsClusteredV3 | GABPA | score:254, expCount:1, expNums:180, expScores:254, srow:3937 |
| 36507 | chr1 | 1397744 | 1398079 | wgEncodeRegTfbsClusteredV3 | MAX | score:131, expCount:1, expNums:439, expScores:131, srow:3938 |
| 36507 | chr1 | 1397767 | 1398076 | wgEncodeRegTfbsClusteredV3 | MYC | score:239, expCount:1, expNums:624, expScores:239, srow:3939 |
| 36507 | chr1 | 1397877 | 1398152 | wgEncodeRegTfbsClusteredV3 | SPI1 | score:293, expCount:1, expNums:107, expScores:293, srow:3940 |
| 36507 | chr1 | 1397963 | 1398272 | wgEncodeRegTfbsClusteredV3 | PAX5 | score:709, expCount:3, expNums:100,101,129, expScores:709,316,328, srow:3941 |
| 36507 | chr1 | 1397970 | 1398233 | wgEncodeRegTfbsClusteredV3 | EBF1 | score:166, expCount:1, expNums:86, expScores:166, srow:3942 |
| 36507 | chr1 | 1397982 | 1398317 | wgEncodeRegTfbsClusteredV3 | TCF12 | score:1000, expCount:1, expNums:116, expScores:1000, srow:3943 |
| 36507 | chr1 | 1398023 | 1398231 | wgEncodeRegTfbsClusteredV3 | TCF3 | score:643, expCount:1, expNums:117, expScores:643, srow:3944 |
| 36507 | chr1 | 1398095 | 1398294 | wgEncodeRegTfbsClusteredV3 | USF1 | score:489, expCount:2, expNums:118,202, expScores:489,286, srow:3945 |
- Previous
- Page 2 of 2
- 9 of 34 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 36507 | cellmeth_recounts | PrEC: 0, LNCaP: 8, DU145: 5 |  |
| 36507 | cellexp | id=ENSG00000215915, name=ATAD3C, PrEC=99, str=36, LNCaP=39, str=33, DU145=28, str=20 |  |
| 36507 | tcgameth | site:cg24687970, B=0.34, L=0.64, H=0.62 |  |
| 36507 | tcgameth | site:cg25101405, B=0.31, L=0.62, H=0.58 |  |
| 36507 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 36507 | tcgaexp | gene=ATAD3C, entrez=219293, pos=chr1:1385069-1405538(+), B=392, L=189, M=171, H=134 |  |
| 36507 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |
| 36507 | pubmed | gene=ATAD3C, G=3, GP=0, GC=3, GM=0, GPM=0, GCM=0 |  |